MmuINT0180017 @ mm10
Intron Retention
Gene
ENSMUSG00000074472 | Zfp872
Description
zinc finger protein 872 [Source:MGI Symbol;Acc:MGI:3588272]
Coordinates
chr9:22197375-22202123:+
Coord C1 exon
chr9:22197375-22197435
Coord A exon
chr9:22197436-22199417
Coord C2 exon
chr9:22199418-22202123
Length
1982 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGTGATTCTCAATCTCACAGTGC
3' ss Score
7.96
Exon sequences
Seq C1 exon
GGGAAAATTGGCAAGACCAGAGCATTAGGGATCAGTGCAAAACTCAGGGAAAATACATAAG
Seq A exon
GTGAGTTGTACTCATTAAAGAACTGGAGTCCTATGATGGAGTCTTAGTATGTCATTGGAAACACAACAAAACTCCAATTTCATGTTTTTTTATCATATAAAATATAAATATTTATATTTTAAGTAAAATACATATTACATTTTGTTGTTGAAATCATATAATTTCAACCTAGAATTTCTACCCCGTCTTTGACCCTTTAGTTCCTAGACAAAAGACACACACAGCCTTTATGTTTACAATAAGCCTTAAACAGTCCCAGAGCCAGGCGGATCCCTACCCACTATGCTACTAGAACCTACTTTCCCATCAGTGACCCCAAGTTATTACTTATGACCTGCTGTGTTTCACCTAGGCTGCTCTGAGCCCCAGTTGCCCAGCTGTCAGGGCCATGTTTTTATGGCTCACCTAATCCATGCGGTTTCTCCTCCTTCCTCCTGCACCACCTTCTTAGACCCCAAGGCCAGGAAACCCAAACCCACCTATGTCTCTTCTGCCCAGCTGTTGGCAGTTGACATGTTTATTTACCAATCTGAAATAACTTGGTGGCAAAGTCTACATGCGGACTGTCTTGGCTCTGGGACAACCAGGTCCTGGGGGCTACATTCAGCATTACAATAAATAACAAAAGACCAAACCTCAACACCTATTTTCGAAAGGGTCCATGATTTTTTAAGATTTTGTTTTTGGTGCTGGAGAGTTGAGTGAGTGGTTAAAGGTACTTGCTGCTTTTGTGATGGACCTGGGTTCAGTTCTCAGTACTGAAATCAAGTGATTCAACCTCTGGTAACTCCAGCTCCCGGAGATATGATGCCCTCTACTGTTTTCCATGGGCACTGCACCCACATTGTACACATACATACAGGCAGGTGCATACACATAAGTAGCAAAAAAAGTAAATATTTATTTTAAATTACCTGTGTGTGCATGAGTTTGTGCATATTTACGTATCGTCTGAGGATTGCCAGAAGATGGATTACCTGGAGTCACACGGTATTGTGGGTTGCCCAGTGTGGGCGGGAACCAAACTCGGGTGCTCTGGAAGATCAGTAAGTAACCTTAACCACAGAACCATCTATCGCTCCAGCCTCCTAAGAGGATGATGTCATCCTCTTTTCCCTTTTTAAAAGTTTTTTTTTTTTATTCGTCTTAATTTATATGTCTCTGTGTGGGCATGTTTGGACAAGCACAGGTTCCCACAGAATCTATAGAGCATCAAATTCCCTGGAGAGCCAGAGTCAAAGCTGATTGGTTATATGTACCAGATGTGGATGCTGGGAGCCAAACTCAGGTCCTCCATAAGAGCAGCCAGGGCTTTTTTTTATTTAGGTTTTTTTTCTTCATTGTTGTTTTTTATTTTTCGAGACAGGGTTTCTCTCTGTAGCCCCGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCACTGAGATGCACCTGCCTCTGCCTCCGAGTGCTGGGATTAAAGGTGTGCACTACAATTATCCAGCTCACCAAGAAATTTTCAAACTGATACAGCCGAGCAGTATTCAAAGAATAACTCCCCTTGAAACAGTGTTAAGAAACTGCATGTAAAAACAGAAATAAACCACACAATATGAATATCACTTATAATTTTTTTAGATGCACTTATTTTATGTGTATGGATGTTTTGCTTCCATGTATGGGTATGTACATGCCTAGTACATGCGGAGTTTAGAAGGTGGTGGATCCTTTAGATCTGGAGTCACAGGCAGTTTTGAGCTATTACATGGGTGCCTGGAACAGAATCTCAGTTGTCCGCAAGAGCAGCAAGCACTCTGGACTGCTGAGTCACCTCTCCAGGCCCAGTGTCTTCATTTTCATAATATCTGTGCTCAAACTCTTTTAGAGTACTCATTTTGTACATGCTCCTTGAAAATAGAAAAAGTATAATCTATGTTTATGACATCATGAATGATTATAAAGTTGTTAATAATGTGATTCTCAATCTCACAG
Seq C2 exon
TGCTCATGTAGAACAGAGACCCCGCGAATGGAAAAGTGCATGCAGGGAAGTCTTCACCCAGCTTCCAGCTCTTAAACAGCAGCATATTCTCCCTGGAGTAAAGCCCTGTGAATGCGGTATATGTGGAAAAGTTTACTCCTGTCGTTCCTCTCTTAAGAGGCACATGCAGTGTCATAGTGAGCACACACAGTGGGAGAGTCACGGATTCAGAGGGAAGTTATACCAGTGTAAGGACTGTGGGAAAGCATTCAGCTTTCAAAGTTCATTTAGAATACATGAGAGGACTCACACTGGAGAGAAGCCCTACATGTGTAAGGAATGTGGCAAAGCCTTCATTTATCACACCACTTATCAAGGACACATGAGGATGCACACAGGAGAAAAACCCTATAAATGTAAGGAGTGTGGGAAGGCTTTCAGCCACCCCAGCTTGTTTCGAAACCACGAACGAGCTCACTCTGGAGAGAAACCCTATGAGTGTAAGCAGTGTGGGAAGACCTTCAGATATTACCAAACCTTTCAGTTACATGAGAGGACTCACACTGGAGAGAAGCCTTACCAGTGTAAGCAGTGTGGGAAAGCTCTCAGTCGCTCCACATCTTTTCGAAGTCACGAGAGGATCCACACTGGAGAAAAACCATATAAATGTAGAAAATGTGGCAAAGCCTTTAGATTCCCCAGTTCCTTTCGCAAACATGAAAGAATTCACACTGACGAGAGGCCTTATGATTGTAAGGAGTGTGGGAAAGCCTTCATTTCTCTCCCAAGCTTTCGAAGGCATGTGATATTGCACACTGGAAACGGGCCTTACAAATGTAAAGAGTGTGGGAAAGCCTTCGATTGTCCCAGCTCATTTCACATTCATGAGCGAACACACACTGGAGAGAAGCCCCACGAGTGTCAGCGGTGCGGGAAGGCCTTCAGCTGCGCCAGTTCTGTTCGAATTCATGAGAGGACTCACACGGGAGAGAAGCCCTATGAGTGTAAGCAGTGTGGGAAGGCCTTTAGTTCCTCTAGCTCCTTTCGCATGCATGAACGAATTCACACTGGAGAGAAACCCTATGAATGTAGGCAGTGTGGGAAGGCCTTTAGCTTCTCTAGCTCCTTTCGCATGCATGAGAGGACTCACAAGGGAGAGAAGCCCTATGAATGTAAGCAGTGTGGGAAGGCCTTTAGTTCCTCTAGCTCCTTTCACATGCATGGATGAATTCACACTGGAGAGAAACCGTATGAATGTAAGCAGTATGGGAAGGCTTTCAGCTGCTCCAGTTCTGTCCGAATTCATGAGAGGACTCACTCGGGAGAGAAACCCTATGAGTGTCAGCAGTGCCACAAGGCCTTCAGTTGCTCTCATTCTTTCCGGATCCATGAAAGGACTCACACTGGAGAGAAGCCCTATGAATGTCAGCAGTGTGGGAAGGCCTTCAGATGTTCTCGCTCCTTCAGAATACATGGAAGAACTCATAATGGGCAATGATCCTTTAAATGTAAGTCATGTGGTAAAGCCTTCCATTGTCCCACTGCCCTTTGAAGATACTCTCTTGCTTAGAGAAATACTGTGAACAAAATAGAACTGGAAAACCTCTCATTTCTCTAGTTGTGAATCCCAGAAAAAAAAAAACCCTATGTGTCTATGTGATGGGAAAACCTTCAGTGGATATGCAACTTCATAAGGCCACATAGATACACAGGGGAAAATAAACCCCATACATTAGGTAGTGTATAAAAGTCCTCAGTTGCTCAGTTATCTGGAAACCACAAACTTGTATTACAGGATAGCTTGATGAATGCAAGCATTGTGGGAAACCATCAGTACTCTGCGCCTTCCAAACATGTGAAGAGGACCCTTAAGAAGTGAAAAGTAATGATTAATTTCCTATCTTATTGAATATTTACATGATACTTATTTGAGAAATTGTGAATTTATGAAGATAACCACTGGAAAGGAATTCTGTAAGTGTGGACAATATGAGGAAGTTCCATGTAAGTTTGTATATGTATATTTTTGAAAAGTCATAAAATGAAAGAAAGGGAGTTTTCTTTTGTCATATGCTCATTCTTTTTTTTTTTTAAAGATTTATTTATTTAACTATGAGTACACTGTCACTGTCTTCAGACCCACCAGAAGAGGGCATCCAAATCCATTACAGATGGTTTAGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAAGAGTCGGTGCTCTTAACCACTGAGCCGTCTCTCCAGCCCCCATATGCTCATTCTTAAAACTGTGACTCTGGACTATAGATTTTTGTTACTTTTGCTTATATGAGCATTGAGGTTAGATTATTCTGAAAGTCATCATTAAATAATGGTACATAAATTTAATAAGTACTGGGTTGGTTGGTTTTTTGGGCAGTTACTATATTTTTAAAGATTTATTTACTTTGTGTATATGAGTACACTGTAGCTGTCTTCAGACACCCGAAAAGTTTTTTTCTAGTGATTTCTTAGAAGCACTTCATTAACTATTCCCAGATAATCTGTACTAACTCAAGTATTATTTTCCCTTTTCTTTAAGGATATACTAAATTTCCTCATTGCAATTACACATTTTCAGATTACAATTGTTTCAGGTTAAGCAATATTATTGTGTTTAAACATTGGGTTTTACTACTGTTTACTTGTGTTACTTTTCATAAAACTAATTAAATTTTATTACGTTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074472:ENSMUST00000178901:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0289210=zf-BED=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGACCAGAGCATTAGGG
R:
AGGGCTTCTCTCCAGTGTGAG
Band lengths:
357-2339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types