Special

MmuINT0179581 @ mm9

Intron Retention

Gene
ENSMUSG00000066880 | Zfp617
Description
zinc finger protein 617 [Source:MGI Symbol;Acc:MGI:2684459]
Coordinates
chr8:74453037-74458529:+
Coord C1 exon
chr8:74453037-74453097
Coord A exon
chr8:74453098-74455917
Coord C2 exon
chr8:74455918-74458529
Length
2820 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GTTCTACATTTTTGTTACAGATA
3' ss Score
8.88
Exon sequences
Seq C1 exon
GACAGAAATTGGGAGAACAGAACACTGAAAATGCATACAAAAATCCTGGGGGAAATCTAAG
Seq A exon
GTAATTTGCACTCACAAGAAAAAGTAATACTTCTCAGGAAACTTGGAATTGCAAAAAATATTTCAAACAAACAAACAAAACAAAGTAAGCCAATCTTCAAAGTGATTTACTTTCTAAATATCTTTAAATATACCTACTGACTGAACATCTGTAATTCAGAATTTTAAATATGAATTTACGTATAAACATGATACCACAAATGATACTTTCTAATGTTTTAATGTTATACAAACTTCGTTTCATACCCAAAATTATTAAAGAGATTTTTGGATGCAAGGTATGTTTGCATTTAGGTTTCACCTCATATATGTTCTAAGACTTTAAACTCTTAACATATTTGTTCTTTGTGTTTTGGATGAGGAATGCTTAAGCTAACAGATTTTCTTTCTTTTTTCCCTTTTTTTCCTTTTTGGAATTTTTTGGGTGGGGGGTTGGTTTTTTTAATTAATTTTTTTTTTTTACTTAATCATTTTATATCTGCTCACTGACCCCTTCTAGTCACCCCCTCTCACAATCCTTCCCCCATTCCCTTCTCCCTTTCTCTAATCAGGTTTCACCTCCATCCCCACCCCCCAGTATCCCTACACTCTGGCACCTCAAGTTTCTGTGAGTCTAGGTGTTTCCTTTCCCATTGAGGCCAGACAAGGCAGCCCAACTAAAAGAACATATCCCACAGACAACAGCTTTTGGGATAGCCCCCATTCCAGTTGTTCAGAACCCACAAGAAGACCAAGCTACACATCTGCTACATATGTACAGAGAGCCCAGGTCTAATCCGTATATGGTTTTTGATTGGTGGTTCAGTTTCTGAAAGGCCCAAAGGTCCAGGTTAGGTCTGTTGGTCTACCTGTGGAGTTCCTATCCCCTTCAGGGCTATGCAATCTTTCCTCCTATTCTTTCATAAGAGTCTCCAAACTTTATCCACTGCTTGGCTGTAAGTGTCTATATCTGCCTGAGTCAACTGCTGGGTGGAGCCTCTCAGAGGACAATTTGCTCCTGTCTGCAAGCATAACAGAGTATCATTAATAATGTCAGGGATTGGTGCTTGCCTATGGGATTGGTTTCAAGTTGGGCTGGTTATTGGTTGGCCATTCCATCAGTCTCTGCTCCATCCCCCAGTGTCTACATTTCTTGTAGACAGGATAAATTTTGAGTTGAAATGTGTGTGGGTTGGTGTCTCTATCACTCCCCTGGAATTCCTGCCTGGCTACAGAATGTAGATGTGGCCTCTTCAGGTTCCATATCCCTAATGTAGTGAGTCATAGCTAAATTCACCACCATTGATTCTTGGGTGCTTCCCTTATCCCAGGCCTCTGTCTCATCATGGAGATGCACCCTACCTCCTCACCCCAGTCAGTTGCAGATTTCCATTCACTTTCATGGCCATCTAAGCCTGTCCTTCCCCACCCATGATCCTGAAACCCCCATTCCCCTCCCCATGCTGCTTCCTCCCAGTTTCCTCCTTCTGTATGCCTCTTATGACTATTTTTTCCCCCTTCTAAGTGAGATTCAAGCTTTTTCACTTGGACCTTCCTTCTTGTTTAGCTTCTTTGGGTCTGTGTATCTGATTTTTATGGCTGATATCCACTTATAAGTGAGTATATACCATGCATGTCCTTTTGGGACCGGGTTACCTCACTCGGGATGATAGTCTCAAGTTCTATCCATTTGCCTGCAAAATTCATGATGTCTTTGTTTTTTGGGTTTTTTTTTTTTTTTGGTTTTGGGTTTTTTTGTTTTGTTTTTAAAGATTTATTTATATAAATATATGTAAGTACAGTGTAGATGTCTTCAGACATTCCAGAAGAGGGCGTCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTACTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTACCCGCTGAGCCATCTCACCAGCCCCGATGTCTTTGTTTTTAATAGCTGTTTTTAATAGTATTTCATTATGCAGATGTACTACATTTTCTTTATCTGTGCTTGAGGTGAGGGACATCTAGGTTGTTTCCAGTTTCTGGCTGTTAGAAATAAAGCTGCTCTGAACATAGTTAAGCAAGTGTCTTTGTGGGATGTTGGAGCATCTCTTAGGTGTATGCCTAGGAGTGCTATAGCTGGGTCTTGAGGTAGAACTATTCCCAGTTTTCTGAGAAACTACCAAATTGATTTCCAAAGTATTTGTACAACTTGTACAAGGTTGTTTGTTTGTTTGGTGGTAGTGGTAGTTTTTGTTTTGTTTTGTTTGAGACAGAGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTGTAGACTAGGCTGGCCTTAGAAATCCACCTACCTCTGCCCTGAGTGAGGTAACCCAGTCCCAAAAGGACATGCATAGTATGTACTCACTTATAAGTGGATGTTAGCCATAAAATACAGGCACCAGAAACACAAGGAAGCTACACAAGAAGGAAGGCCCAAGCAAGGAACTTTGAATCTCACTTAGAATTGAACTTAGAAATGTGCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTACTGGGATTAAAGGCATGCACTATCACTGTCTGGCTGTAACATAGATTTTTTTCAATGTTTGCAAAATAGTTAACTTTGGGGAAAATACTGAGAAACCCCACATGATTACCACTGCTTTGACTAGTGGTATTTAAGCTGTCTTATTGAGTCTTCACTCCATTTTGTACCGTTTATTTAGAATGTAAAGCTTACACTTTTCCTGATAATGTAAGAAAGTAAGTTTTCTACCTTTAAATAAGTGTAAAATCATTTTGTATGTTCTACATTTTTGTTACAG
Seq C2 exon
ATACCAAGTGGTAGAGAAGCTTTGTGAGTATGAAGAAGATAGTCAATGGGAAGAAATCTTCAGTGAGATTCCAGATCCTGTGGTGAGCCAGAAAACTGGAGAAAAGCCCTGTGAAAGCCATGTGTATGGAGAAGATATCACTGGTCATTCATCTCTAAATGTGTCCCTCAGAGGTCAGACTAGATGCAAAACACATGAGTATAAAGAACACGGAGAGAAGCCATGTAAATGTAAAGACAGTGGAGTGGCTTTTGGTTCTCCCCAGAGCTTTCTGAAGCATGAACAAATTTACACACAAGAGAAACCCTATGCCTGTAAACAGTGTGACAAAGCCTTTAAGTATCTCAGTTCTCTTCAAAATCATAAAAGGATCCATAATAGAGAAAGAAACCATGCGTGTAAACAATGTGGGAAATCTTTTAAGAGACAGAGTAATGTTCAAGCCCATGAGAGAAATCACACTGGAGAGAAACCCTATGTGTGTAAGCACTGTGGGAAAGCCTATACTTCCTACAGTACCCTTCGAGCACATGAAAGAAGTCACACAGGAGAGAAACCCTATGTGTGTAAGCATTGTGGGAAAGCCTATACTTCCTACAGTACCCTTCGAGCACATGAAAGAAGTCACACAGGAGAGAAACCCTATGTGTGTAAGCATTGTGGGAAAGCCTATACTACCTACAATACCCTTCGAGCACATGAAAGAAGTCACACAGGAGAGAAACCCTATGTGTGTAAGCATTGTGGGAAAGCCTATACTTCCTACAGTACCCTTCGAGCACATGAAAGAAGTCACACAGGAGAGAAACCCTATGTGTGTAAGCATTGTGGGAAAGCATTCACTCAATCTAGCTACCTTCGAATACATAAAAGAACTCACACAGGAGAGAAACCCTACATCTGTAAGCAATGTGGGAAAGCCTTTGCTCGTTCTAGCCACCTGCAAATACATAAAAGAAGTCATACAGGAGAAAAACCCTATGTATGTAAGCAGTGTGGGAAAGCCTTTGCTCAATCCAGTTACCTTCACATACATCAAAGAAGTCACACTGGAGAGAAACCTTACGTATGTAAGCAGTGTGGGAAAGCCTTCACTCGTTCTAGCCACCTGCAAATACATAAAATAACTCATACTGGAGAGAAACCCTACTCATGTAAGCTTTGTGGGAAAGCCTTTACTCATTCTAATTACCTTCAGATACATAAAAGAATTCACACAGGAGAAAAACCTTATGTGTGTAAGGAGTGTGGGAAAGCCTTTGCTCGTTCCACTTCCCTTCACATACATGAAGGAACTCACAGTGGAGAGAAACCTTATGTATGCAAGCAATGTGGGAAAGCCTTCACTTTGTCCAGTTCTCTTCGAAGGCATGATGTAGTTCATTCAGAAGAGAAACCCTATATTTGTAAGTGTTGTGGGAAAACCTTTGGTTGTTACAGTAGCGTTCAGAAACATGAAAAGACTCATAGAGAAAACAGACTCTGTTAGTGTAATAAATATGGGGAAACTTAGTTGCTCTGATTCTTTTCAAATACATGACATAGCTGACACTGGAAAGAAACCCAAGGTTTGTATCCATTATGGGATGCTTTCATTGACCTTAGTTCTTTTTAATACCATGGAAGGATTCACACTGGAGAAAAACTTCTGGATATAATACAGAAAAATGTTCATTTATTCCGCTTCTTTAACAAACATGGAAAAACTTACACTGGAGAGAAATCCTAAATATAAAATGTGGAAACCCTTCATTATCACTTGACCGTCTAAAATTCATGAAAATGTGTAATCCATAGCATGAAGAAGTATTTTCGATCCATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCCACAAAGTGAGTTCCAGGACAGCCAGGACTATACAGAGAAACCCTGTCTTAAAAAAAAAAAAAAAAAAAGATAACAGTATGGAGAGAAAACCCTTGAATAAAAATGATACACTAAGAATAGGCTCTTCAGACGGCCCACATGCAACAATGCACATGGAATCGGAAGATTGAGTATGAAAAACACAGCAGTTTTCTGTTTTCCTGTGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGATCAAGAGTTTTGAGTTCTGGGCTGTGTTGTCTACCTGATAAAAGAAATTTTTGTGTGTTATTTTTCTTTATTCTTAATAATTTCAATCGTATATACAATGAGTTATGAGCATATTATTCCATTTTCTCCAGCCCATTAAATCCAGTTACTGCTGCTCATGTGTACATGAGCATAGCTACTTCCTCAGAAGCTGTCAACTGTCAATAACTCCTCAGTAAGGGGTGAAGGTTCAAGATCATCTACCCCATTAATGCTAGAATTTTGGCTGTCTTAACCAAATGTAGGTAATCACAAATACTACAAAGTCATGGATATAATAGCCATATAGTGAACAAAAGACTGCATTTCACACTACCCCCATCTGACTTGTATTCTTTCTACCTCCTAGAAAATTGTTTTAATAAAGTTTGATTTTTCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066880-Zfp617:NM_133358:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.762 A=NA C2=0.088
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134751=DUF4116=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000112926





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000091145, ENSMUSP00000120213
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:12016667-12017875 
ALTERNATIVE
HsaINT0187229
(ZNF433)
Human
(hg19)
chr19:11761233-11762467 
Rat
(rn6)
chr7:15071229-15072632 
LOW PSI
RnoINT0168660
(Zfp799)
Cow
(bosTau6)
chr7:14013956-14014337 
LOW PSI
BtaINT0166117
(ZNF791)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"