RnoINT0168660 @ rn6
Intron Retention
Gene
ENSRNOG00000032552 | Zfp799
Description
zinc finger protein 799 [Source:RGD Symbol;Acc:1359692]
Coordinates
chr7:15069470-15072693:-
Coord C1 exon
chr7:15072633-15072693
Coord A exon
chr7:15071229-15072632
Coord C2 exon
chr7:15069470-15071228
Length
1404 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
GTACCTTTTATTTTTTGCAGTAG
3' ss Score
6.59
Exon sequences
Seq C1 exon
GAAACAAACAGGAACACCAAAATATTGAAAATGAGTATGAAAATCTCTGGAAAAAACTAAG
Seq A exon
GTAATGTATACCCTAGGATATAGCTGTGTTTCGCCCAGTTCTTGGTGTGCTAATCCATTTTACAAAGAAGTAGTCATACAAATAAATCCTGCTTCAAACTGTTTTAACATCAACAAATCTTCTTTAAAACTTCATTAACCTTCAGCGCTCAGAACATCCTAATGTTAGTAACAACTGGAGCGCCATGATGCCTACCACAAGTAATACCATATCTTGGTTCATAAGCTCTGTCTATATTATTATTTAAAATGTTGTATTGATATATTTCTAAGTTTTAGGTATGTGTTGTATATGAAACAAAAATAAAATTTGTTTTTATAATAGGAGCAATTGTCAAGACAAGTCATTATGGAGATAAAAGTATGTTAGAATCCAATATTATTTTAGTCACTAGTACATCAAAAATGTATGTAATAGTACGTGTCGAAAAATATGTTTAATTAGCCCAAATGCTTGAATTACCCTAGATGCCTAGAACACATGAAACTCAAAACGAATGATCAAAATGTGAATGCTTCACTCCTTCTTTAAAAGGGGAACAAGAATACCCTTGGCAGGGAATAGGGAGGCAAAGTTTAGAACAGAGGCAGAAGGAACACCCATTCAGAGCCTGCCCCACATGTGGCCCATACATATACAGCCACCCAATTAGACAAGATGGATGAAGCAAAGAAGTGCAGGCAGACAGGAGCCAGATGTAGATCTCTCCTGAGAGACACAGCCAGAATACAGCAAATACAGAGGCGAATGCCAGCAGCAAACCACTGAATTGAGAACAGGACCCCCGTTGAAGGAATCAGAGAAAGAACTGGAAAGCTTGAAGGGGCTCGAGACCCCATATGAACAACAATGCCAAGCAACCAGAGCTTCCAGGGACTAAGCCACTACCTAAAGACTATACGTGGACTGACCCTGGACTCTGACCTCATAGGTAGCATTGAATATCCTAGTAAGATCACCAGTGTAAGGGGAAGCCCTGGGTCCTGCTAAGACTGAATCCCCAGTGTACGTGATTGTTGGGGGGAGGGCGGCAATGTGGGGAGGATGGGGAGGGGAACACCCATAAAGAATGGGAGAGGGAGGGGTTAGGGGGATGTTGGCCCGTAAACCGGGAAAGGGAATAACACTCGAAATGTAAATAAATAAAAAAAAAAAGAAGCTAAAAAATAAAATGCAAAAAAAATATGTTTAAATGTGATGTAGATATTTAGCACTTGCCAATAATGAAGACAGTATTATATAACCACAAATTATCTTCGTTTTTATTGTTAATGTCCTTGAACCAAACTTTAAAACAAACAGTTCAAATATTCTAAAAAATTATTACAGGGGCTATAACTACTACTACTTGTGATAAACCCTTAGTGAGCAATGTTTTAGTATTGTACCTTTTATTTTTTGCAG
Seq C2 exon
TAGTCAGTTGTTGGAGAAACTCTGTGAATATACGGAAGGTCATCAGTGTGCAGAAATCTTTACCTGGGCTCCAGAGTGTGCTGGAAACCAGAAATCATGTCCAGGAGTTCCCCCATACGAAAGCCATGTCTACGAAGAAGTGGTTATTGGCCATTTATCTCTGAATGTCCCCCCTCATTCTCACCCAGGACACAAACCGTATGATGTTCAGGAATGTGGGAAAGAGTTGTATAAACACAAAGAATCTGGGAGCACCTCCAATCCTTCCACACCCTTTCAGAAGCAAAGAAGAGTCCACGCTGAGGAGAAACCTGAAACTAGTCACTGTAAGGAAGACTCTAGGTGTCTCATCTTCAGTCACAATGATGACAGGACATCCAGTGGAGAACAGCACTATGAATGTAAGCAGTGTGGGAAAGTGTTCACTTCTGCCAGCTCTTTTCGAAGGCACGAGGAATATCACAGCCGAGAGAAAGCGTACGTTTGTAAGCAGTGTGGGAAGGCCTTCCCCTTTCCTAGTTCCCTCCAAATACACGAGAGGATTCACACCGGTGAGAAGCCCTATACGTGTAAGCAGTGTGGGAAGACCTTCGCCCGCTCCAGTTCCCTCCTGACACATGAGAGAATTCACACCGGAGAAAAGCCCTACGTGTGCAAGCAGTGTGGGAAAGCCTTCACCGATCGCAGCTCACTTCGATTCCACGAAATGATGCACAGTGGCGAGAAGCCATATAAGTGCACGAAGTGCGGAAAGGCTTTTGCTTCTTCGGGCGCCTTCCGAAAACATGAGCGGACTCACACAGGAGAGCAGCTCTTCGTGTGTTTGCAGTGTGAGAAAGTTTTCAGCTGTGAGAGTGCATTCCGGACACATAAGATAATTCATTCTGGAGAATGCGTGTGTAAGCAGTGTGGCAAAGCCTTCACCAGTCACAGTTCCGTCAAGTACCACGAACTAATGCATAGCGAAGAGAAACCCTATGTATGTAAGCAGTGTGGGAAAACCTTCAGGTCTCCCAAACAAGTTCAGATTCATAAACGAACTCACACTGGAGAAAAGCCTTACGTTTGTAAAGAGTGTGGCAAAGCTTTTACTTTCCTCGGCTCCCTTCAGTACCACGAGTTGATTCATACCGGTGAGAAACCTTATCTGTGTAAACAGTGCGGGAAAGCCTTCAGGTCTTCTCGTCAGGTTCAGATACATGAGCGAACTCACACTGGAGAGAAACCCTATGTGTGTAAGCAGTGTGGCAAAGCCTTCTTTTCTTTGTATCATTTAAGAAGACACGAAGTGATTCACAGCGGCACGAACCCCTACGTTTGTAAGCAGTGCGGGAAAGCCTTCAGTTGGTTCAGCACCTTTCATAGTCATAAACAGACTCACACTGGCGAAAAGCCCTATTTATGCAAGCAATGTGGAAAAGCCTTCTGTAGTCGCATATCGTGGAGAAGGCATGAGAAAGCTCACACTACAGTGAAGCCCTATGCGTGTGTGCAATGTGGAAAAGCCTTCCGTTCTCCTAGTTATCTCAAAATACACGAAAGGATCCACACTGGGGAGAAACCCTTTATATGTTCTCAATGTGGGAAACCCTTCCGATCTTTTCGTTATGTCAAATCCCATGAGAGAAGTCACACTGGAGAGAAACCCTTTGTGTGTACAGAATGTGGGAAAGCCTTCAGTTATTATAGCTCTTTCCATAGACACAGAAGAACTCACCAGACAGTAACCTTGAACACAGAGCTTGAAAAGACTTCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032552:ENSRNOT00000037708:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.1),PF134511=zf-trcl=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACAGGAACACCAAAATATTGA
R:
GCGTGGACTCTTCTTTGCTTCT
Band lengths:
358-1762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]