Special

MmuINT0179598 @ mm9

Intron Retention

Gene
ENSMUSG00000068959 | Zfp619
Description
zinc finger protein 619 [Source:MGI Symbol;Acc:MGI:1917477]
Coordinates
chr7:46789485-46795785:+
Coord C1 exon
chr7:46789485-46789545
Coord A exon
chr7:46789546-46790108
Coord C2 exon
chr7:46790109-46795785
Length
563 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TCTCATTCATCCTGCAATAGGAA
3' ss Score
6.44
Exon sequences
Seq C1 exon
GAATCAAATCAGAATACCAGACCATTGAAGACCAGTATAAACAGCCTGGGAAAAATATAAG
Seq A exon
GTAAATTACATGTATTAGCTGGGGGAAAAATATCTTTTGAGAGAATCTTCATATGTTATGAAAATTTATGAACAAGTCAGCAAGGCAAACACAAATTTAAATTATTCACCATTATAAAAATTTTACAAAAATATGTGATTCCATGTAAGAAAGCTGTCCAGATTTGAAAACAGTTCACTTGGAAAAAGTACTGAGAAAAATGCATGTATGATCTTTGCTGTTTTGGGAATAGCTTGAAGAGCCGTGTTACAGTATCACCAATCTATTTAGTTAGAGAATATTTAAATATTGCAGACGGCATACACTTTCTCTGATTTAGGCAATGGTGGGAGACTAAGACCTACCAATAGCTAAATGATTATCAGTACAGCAAACATTAGTAATATTCCTGCCCGTGTTTACAGCCGTCAAATGCTAGGTTTGGTCTGTGAGAATAAAGAAGGCAATGCATTTGGAGAAACCTCCAAGAAATCAAATATCAATAGAAGTCTAGAGATTTCTGCTCAAGTGGAACTATGTGACTGTAGTTTGTTTGTTTTCTCGTCTCATTCATCCTGCAATAG
Seq C2 exon
GAACATCATAACCCGCTCCGGATACACTCCATACGCACTTGAGGACTGTGGGGAGAAGCCATATCACTCCAGTTCTCTCACAACAATTCACATATACGTGGGAATCCACACTGTGAGCGGAGCGTATGGATATGAAGTGTATTCAAAACCTGTGGGTGCTCCAAGTTCATGTGGCACTGGTGAGCAAATTCAGAGTGGAGAGCAGCCCCATGGATATACTATAAACAAAACAGCCTTTATTTGCCCCAGCTCATTTTGCAGCAGCGAAGTAACTGACACTGAAGAAAACCCTTCTGAATGTAAACCAGGTGGTACAACTCTGAGTCCTTTCAATTACCCGCCGTTTTGCAGTGGAACTCATAATGGAGGAAAGCATGTTGACTGTACACAGTGTGTAAAGGCTTTCAGATGTCACAGTTCCCTTCAGAGACAGGAAAGAATGTGTGCTGAGGAAAAACCCTATGAATGTAAACAGTGTGGTAAGTCATTCGTTTACCCCTATTTACTTAAAATGCATGAAAGGCATCATACGGGAGAGAAGCCTTATAAGTGTAAGACATGTGGTAAGGCATTTCTTTGTTCCTCTTTCCTGCAAAGACATAAAAGAACTCATACAGGAGAAAAACCCTATAAATGTAAGCAGTGTGCTAAGCCCTTTAGACGCCTCAGTAATCTTCAGGTCCACGAGAGAACTCACAGTGGAGAGAAACCCTATGAGTGTAGAGAATGCGGTAAAGCTCTGAGAAGCCACAGTTCCCTTCAAAGACATAAAATAGTCCACGCTGGGAAGAAACCCTACGAATGTAAGCAGTGTGGTAAGTCCTTCATTTATCCCTACTTACTTCAAACCCACGAAAGATCCCATACTGGAGAGAAGCCCTACAAATGTCCCCTGTGCAGTAAAGCCTTTCGTTGTTCCTCTTTCCTGCAAAGACATGAAAGAACTCACACCGGGGGAAAACCCTACGAGTGTAAGCAGTGTGGTAAGGCTTTCAAAGGGCACAGCTCCCTTCGCTTGCATGCAAGGTCTCACGGCGGGGAGAAGCCATATAAATGTAATCTATGTAGTAAAGCTTTCCTGTGCCCCTCTTTCCTCCGAAGACACGAAAGAACTCACACTAGGGAACGGCCCTACGAATGCAGGAAGTGTAACAAAGCCTTCCGAGGTCAGAGTTCTCTTAAGTTACATGAACGATCTCATACCGGAGAGAAACCCTATAAATGTAAGATCTGTAGTAAAGCCTTTCTATGCTCCTCCTTCCTCCAAAGACATGAAAGGATTCACTGTGAAGAAAAGCCCTATGTGTGTAAGCAGTCTGGAAAAGACCTTAAAGATAGAAGTTCCTTTCAAAGACAGAAAGTGTCTCATGCTGGCGAAAAGCCTTATGAGTGTAAGCAGTGTGGTAAGTCCTTCGTTTACCCGTGTTTACTTCAAGTTCACGTCAGAACCCACACTGGTGAGAAACCCTATAGGTGTAAACAGTGTGACAAGGCTTTCAGAAGTCTCAGTTACCTTCGCATACATGAAGGAAGTCACACCGAGGAAAAGCCCTATGAATGTAAAGAGTGCGGCAAAACCCTCAGCTGCTCCAGCGCCCTGCAGTTACACACACGGACACACACGGGAGAGAAGCCCTATGTGTGTCAACAGTGTGGGAAAGCCTTCAGGGGATTCAGTTACCTCCGCGTCCACGAAAGGACCCACACTGAAGCCAAGCCCTACGAGTGCAAGCAGTGTGGGAAAATTCTCAGCTGCTCGAGTTCCCTTCAACTGCACGAAAGAACCCACACTGGGGAGAAACCTTACTCGTGTAACCAGTGCGGGAAAGCCTTCAGAGGTCTCAGCCGTCTCCGAGTCCACGAGATAATTCATACCGGCGAAAAACCCCACGAATGTAAACTCTGCGGGAAAGCTTTCCGGTATCGGAGTTTACTTCGCGTCCACGAAAGGACCCACACCGGTGAAAAACCCTATGCTTGTAAACAATGCAGCAAAGCCTTCAAAAGCCTCAGTAACCTGCGGATACACGAGAAGACTCACAGTGGGTTCTATGAGTGTAAGCAGTGTGGCAAAACCCTCAGTTCTTCCAACTCCCTCCAAGTACACGAAAGGGTCCACAGTGAAGAAAAATCGCACGCGTGTAAGCAGTGTGGCAAAACCTTCCGCCGGCTCAGTAATCTCCAGGTCCATGAAAAAACTCACGCCGAAGGGAAGCCCTACGAGTGCAAGCAATGCGCTAAGTCCTTCCTTTATCAGTATTTACTCGAAAAGCATGAAAAGTCTCACACTGCAGAAAAGCCCTATAAATGCATGATCTGCAGTAAAGCCTTTATCTGTGCCTCTTTCCTTCAACGGCACGAAAGGATTCATAGCGCAGAAAAACCCTATGAGTGTGTACAGTGTGGCAAAGCGTTCAAAGGCCTCAGTTCCCTTCAGCTACACGAAAGAGCCCACGCTAGAGAAAAGCATTATGACTGTACACAGTGTGGTAAAACCTTCAGATGTCACAGTCTCCTCCAGGCGCATGAAAGAACCCATACCGGTGAAAAACCCTTCGTGTGTGCAGAGTGTGGCAAAACCTTCAAAAGTGCGGGTTACCTTCGAATTCATGAAAAAACACACAGTGGTTTCTATGAGTGTAAGCAGTGTGGTAAGATTCTCAGCTGTTCAAGTTCTCTTCAGTTACACGAAAGAACCCACACCGGCGAAAAACCCTACGAATGTAAGCAATGTGGTAAGGCCTTCAGAAGTCAGAGTTCCCTTAGAAGACACGAAAGGATTCACGCCGGAGAGAAACCCTACGAATGCAAGCAGTGTGGGAAGTCCTTCATTTATCCATGCTACCTTCAAATGCACGAGAGATCTCACACCGGAGAGAAGCTCTATAAATGTAAAATATGTAGTAAAGCCTTTCTTTATCCCTGTTTCCTTCAAATGCACGAAAGAACTCACACCGGCGAAAAACCTTATAAATGCAAGCAATGTGCTAAAGCCTTCCGAAGTCACAGTTCCCTTCAAATGCATGAAAAAACGCATACAGGAGACAGACCCTATGAATGCAAGCAGTGCGGGAAAGTCTTGATAAGTCATAGTTCTCTTCAGAGGCATAAAATAGCTCATGCCGGGAGGAAACGTTACGAATGTAAACAGTGTGGTAAGTCCTTTGCGTATCCATATTTACTTCAAACTCATGAACGATCTCACACTGGAGAGAAGCCCTATGAGTGCAAGGACTGCAGGAAAGCCTTTACTTGTCACCGTTCCCTTCAGAGACACAGAAAAACACACACCTGAGGGGAAGGCTCTGTAAATGCAAACTAGATTAGACTACCTAGTTCTCTTCAAATGTGTGAAAGTACTGGGAAAAAGAGCTAATGAATGTAAAACAAATGCTGAAGTTTGTTGTTGTTGTTATTGCTGTAGTTTGCTATGGAAAGTTTAGAAGGATTCATTTGGGGGAGGGGAACCCTTGAATTGTGCTAAGACCCTCAGTTCCATTTGAAGACATGAAACTACCTGGTGTTAAAACTCAGAATGTAATATGGTATTTCATTTCTTAGATCTACTAAAAAATACATAAGCTAATGAAGGTAGTCACTTGGGAAGTAAAGCTTGTATTTTAACAATACTAAAAATCATGTGATAACTCTGATTAGGGGATCTTACAAATCTATGTGTATCCTGAGCTTGTTCCCGCCCGCAGAAACACACACAGGACACGCCAGATTCTTCCGTGGTTAACTTTACTTCATAACATATTGTGGTAGACAAAGAAGGCTCAGAAAGTATGTGGCTTAAATACCCTTAAGGCGTGACGTGTCTAAACTAGGACTGGTAGCTACACCCACGAACCTCATGCACCCTAGGGATAGGCTAAACGCCCCAGGGGTTGGGCTAGTGCCCTGGGGGATGGACCGTGCCCGGAAATGGGCTGGTGACTTTTGGCGGGTTTTTGCTTTTAGCACATGCGCATATAGCTTGTTCTTTGTTTAGGTGGTATAAGGCACTGCGGAGCCAGCACCATCTTAAGATGGTAAATGTTATTGCGGCTCTCTACACTATGTGTGTTGAAATGTTGAAGCAAATCATGCTAAAAGCTTTATAACATGAATAAAAAGCTATGCATTTTATGAATGTATGGTGGTTTCCAGTGATTTGCATTTGAAGATATTCCCAGCTGCCCCTGATAGATCAGGCCGGTACTCTTGGGTACTCTGGTTTGCTGCAGCTGATAGCAAGTTCAGGGCCAGCCCAGACAACTTAGTGAGACCAGTCTCAATAAAAAATTGGAAAGAAAACCAAAGCCACTCATTAATTGAGCTCTGGTCTCCCAGTGTAATTTCTAGTCCTAGCATAAGAGAAATGAGAAGGCGCCTAGGTGATGAATTTCCATTTCTTTTACAGGAAAACACTGAAGTGAAAGTTTCCTAAGTGTAGACATGAACTTTAACTGCAGAAATAGCTGATGCAGATTGCTAGACAATCTCTTAATTACCATAGATGTACCTGATAGTGTAGCCCACCATACACTTATGCTACATGGTATCAGTACTCCACTAGTCTGTGGAATGTCGCTTCATTGTATATTTTAGGCATGGTACCAACAAATATGTATCAAAAAAACATTTGGCATGAAAGTAAATGCTGTATCTATGAAGAGTACTTATTGTGAGTGGAGTTTTGAGGACTGGATTTTATTCAATCAGAGACTTAGGTGAATATAAACTCCTAGGACACATTAATCTACTGTAAAGTTTCAATACTATAGACTTAGTTTATTGTATATTGATGTTTTCCTAAATATTAAACTAACTTAAAGCTTTATACAGTGTGTATAATTTTAATACTTTTGATTTTTGTGAGAACAGTGCTTAAAATGTAGCCATTTTATGATTGTTTAAAACTATTTCTTTGTATGCATATTCTATATATATTTTTGCATTATAAATACGTTTTTAAAAACATTGTGAAAACCAGCTGTCACTTAGAACAGAGGCAGGAGGGTTGGTATAGCTTTCAGATCTATATGCACTGATTCTCATGTGCTCCCACATCACTCCCCTACGTTGTATCGTATGATTAACTGCACCTTCCTTTGTTCTGATCATATGACATTGGCATTGCATGTGATGTCATCCCATGCAATGCCTACTAACAGCTCCTTGAAGCACCTCAGCTCACACACAAGACTTGCTGAATGTTGCAAACGGAAGTACTTTTACTAAATAACCAGACTTTTCGGCTCTTATGGAAATAATGATTTCGTTGTGGGAAACAGACCGTCCTGTTTTTCCAGTGTCATTCATCAGCATGTAAGTACTAGATTAACTTATCTTTCCATTATACTGTAGAGTTTACCTTTAAAAGTTGCCTGAGTTACTGACTTGTATTTTATTGAAAAAGAATCATTCAATAATTATTGGGTTTCAATAATGAAAAATATTTTTAACAACTTATGAAATGGTCCTATCTGTATTTCTGCCTAGTATTTTATGTGATGTTCTTTATATTTTCCAAGTATAAAGCCAAAGTATCAACTCTGAAAAACATTGATTCCCTGTTCACTGCATTATCAAATACTCAGCCAAGATTTACTCTTTTATGTAAAAATAAGTATGCCTATTTTATTAATGTACAAGCTTAACTTTCATAATAAATGATAAAATTATCTAGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068959-Zfp619:NM_001004139:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.036
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.3),PF054957=zf-CHY=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.2),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.2),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.0),PF134651=zf-H2C2_2=WD(100=2.0),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.1),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF0009621=zf-C2H2=WD(100=2.1),PF0009621=zf-C2H2=WD(100=2.1),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.2),PF054957=zf-CHY=WD(100=7.2),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.2),PF127602=Zn_Tnp_IS1595=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000103650





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:12074422-12075311 
LOW PSI
HsaINT0188543
(ZNF844)
Human
(hg19)
No conservation detected
Rat
(rn6)
chr1:98228633-98229153 
LOW PSI
RnoINT0168657
(Zfp788)
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACCAGACCATTGAAGACCAGT

				
R: 
CACCTGGTTTACATTCAGAAGGGT

				
Band lengths: 
357-920

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"