RnoINT0168657 @ rn6

Intron Retention

Gene

ENSRNOG00000014380 | Zfp788

Description

zinc finger protein 788 [Source:MGI Symbol;Acc:MGI:1914857]

Coordinates

chr1:98228573-98231855:+

Coord C1 exon

chr1:98228573-98228632

Coord A exon

chr1:98228633-98229153

Coord C2 exon

chr1:98229154-98231855

Length

521 bp

Sequences

Splice sites

5' ss Seq

GAGGTAAGG

5' ss Score

10.28

3' ss Seq

ATGTTTCATTGTTCTAACAGAAT

3' ss Score

8.75

Exon sequences

Seq C1 exon

AAACGAATGGGAAGAGCAGAGCATGGAGGAGCAGCACAGAAATCCGAGGAGAAGTCAGAG

Seq A exon

GTAAGGTCCACGTGGAGGCAGAGGTCCCATGAGTTAAGTCAGAGGTAAGGCCCACGTACAGGCAGAGGTCCCATGAGTTAAGTCAGAGGTAAGGCCCACGTGCAGGCAGAGGTCCCATGAGTTAAGTCAGAGGTAAGGTCCACGTGGAGGCAGAGGTCCCATGAGTTAAGTCAGAGGTCCACGTGCAGGCAGAGGTCCCATGAGTTAAGTCAGAGGTAAGGCCCACGTGCAGGCAGAGGTCCCATGAGTTAATCTTAACATTGAAATTTAAAGAAAAAGAAATAAGCAGAGATGTAAACTTAGTCATCTTTAGTTCATTTGGAAGCAATTCTAAGAAATGCATTTTTAGACAACTCTATGGGAGCCATATCAGAAAATCACAAGTCCCCTTGATTTCAAACCATTCACCGGTACCAGAATGGTTAAATTTTCTCTTGTTTTGGAGTAGTACTTATCCAAGACTAATAATCAGAAAGTGAGTAAAATCACCATTGCTAATGTATGTTTCATTGTTCTAACAG

Seq C2 exon

AATGTGTACATGTGAGAGACTATATGAGAGTACCGAAGGTTGCCAATCTGGAGAAATCTTTACCAAGACACCACATCTGACAAACATCTTCCCTGGTCCAAAAGTTGAGCTTGAGGAAAATGACAGGATACAGTATAAATGTGAACAGACCTGGACAACATTGTATTCTGTCACAAGTATTCAAACCTATACGCAAAGCCTCAACATGAGTGGGCCTTATAATGTATGCGGCACATCCTTCGGTTTTCCTAGCTCATTTGGAAGATATCAAGAAATTCCTGTTGGAGAAATGTATTATGAACAGAAGGAAAAGAACTGTGTTTCTGTTAAATCATTTTACACATATGAAAGGAATGACAAAGCAGCAATCGATAATGACCGAAAACCATTTCATAGACCCCAGAGTTCTTTTGGTTCCTGTGAAAGTCATGGAAGAATTAATACAAGAAAAAGGTCCTATGAATGCAAACTATGTAGTAAATCTTTCATGTATCCTTCTTTACTTCAAAAACATGAAATAACCCATTCCCGTGAAAAACCCTACAGATGCCTACAATGTGGGAAAGCTTTCAGAAATCTCAGTTCTCTTCAGAAGCATAACATAGTTCATACTGAGGAAAAGCCTTATAAATGTCCTTATTGTAATAAAGTGTTTATCTGTCAGGGATCACTTCAGTCACATATAAGAGTTCATACTGGGGAAAAGCCTTATGAGTGTAAACAGTGTGGTAAAGCTTTCAGAGTTAACAGTTCCTTTTGGCGGCATAAAAAAGTTCATACTGGGGAAAAGCCCTATGAATGTAAACAGTGTGGTAAGTCCTTCATTTATCCTTCTTTACTTCAAACCCATGAAAGAACTCACAGTGCAGAAAAACCCTATAACTGTAAACAGTGTGGTAAAGCCTTTAAATCTCACAGTTCCCTTCGAGTCCATGAAAGAAACCATACTGGGGAAAAGCCCTATGAATGTAAGCAATGTGGCAGATCCTTTATTTACCCCTGCTTACTCCAGATCCATGAAAGAACTCACAGTGGTGTCAAACCCTATGGATGTAAGCAGTGTGGGAAAGCGTTCAGACGCCTCAGTGACCTTCGAGTACATGAAAGAATTCATACTGGAGAAAAACCTTATGAATGTAAACAGTGCATTAAATCTTTTATTAATCGGTATTTACTTAAGATGCATCAAAAGTCTCATACTGGTGAGAAACCCTATAAATGTAAGATGTGCAGTAAAGCCTTCATTTATCCTTCCTTACTTAAACTGCATGAAAGATCTCACACTGGGGAAAAACCCTATCCATGTAAACAATGTGATAAAGCCTTCATTTTCCCCTCTTTACTTAAAATGCATGAAAGAACTCACACTGGGGAAAAGCCTTATGCTTGTAAACAGTGCGGTGAAGCCTTCAAAAGCTACAATTCCCTTCAGAGACATAAAAGAATTCATACTAATGTAAAGCCTTACGAATGTAAACATTGTAGCAAAACCTTCATATGTCAGAGATCCCTTCAGTTACATAATAGAACTCATACTGGAGAAAAACCATATAAATGTGAAGAGTGTGGTAACTCCTTCAGATACCACAATTCCCTTCAAAGACATAGAATAATTCATACTGGGAAAAATCTCTATGAATGTAAACAGTGTGATAGGTCCTTCATTTATCCGTATTTACTCCAAATACATGACAGAACTCACTCTGGGGGAAAACCCTATGAATGTAAACAGTGTGGTAAGTCCTATATTTATCCTTCTTTACTACGAATACATGAAAGAACTCACAGTGCGGAAAAACCCTATAACTGTAAACAGTGTGGTAAAGCCTTTAAATCTCACAGTTCCCTTCGAGTTCATGAGAGAAACCATACTGGGGAAAAGCCATATGAATGTAAGCAATGTGGCAGGTCCTTTATTTACCCCTGCTTACTCCAGATCCATGAAAGAATTCACAGTGGTGTGAAGCCTTACGAATGCAAACAGTGTGGGAAAGCCTTTAGGGGTCACAGTTCCTTTCGGATTCATAAGAAACTTCACAGTGGGGAAAAACCCTATGAATGTAAACAGTGTGGTAAGTGCTTCGTTTATCCATCCTTACTTCGAATGCACGAACGAACTCATAGTAGTGAAAAGCCCTATGATTGTAAGCAGTGTGGTAAGGCCTTTAAATCTCGTAGTTCCCTCCGAGAACATGAAAGAAACCACATTGAGGAAAAATCCTATCAGTGTCAACAGTGTGGTAAAATCTTCAGGCGTTACAGTTCATTTCAAAACCATAAACAAATCCATGCTATAGAAAAACTCAATGAATGTAAACAATGTGGTAAGATCTTCATTTATCCTTCTTTTCTTCAGAGGCATGAAAGAACTCACATTTGTGAAAGAACCCTATATATGTAAACAATGTGATTAAAGCTTTACCATATTACAATTCTTTTAGGAGAGATAAATTTCATTCTGAGGGGGTGTGTAGATATGAATAATGTAATAAAGCCATTTTTACAGTCGTCTTCAACTGCAGAGAAAAATTCATATGTAACAATTGGAGTATGTGAGAAAGCCTTCTGAAAGTAACCATCCCCTTCAAATGTATGGAATAACTCATAATGAAGTAGAACCATGTTCCCTATGACATTAAAAATTGTCATGTTAGAAGGGAATCCTGTAAATATAAACAATGTGAAAACTCATGTAGTGAAAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000014380:ENSRNOT00000019278:1

Average complexity

IR

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=0.615 A=NA C2=0.019

Domain overlap (PFAM):

C1:

NO

A:

NA

C2:

PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF079757=C1_4=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF134651=zf-H2C2_2=WD(100=3.2),PF0009621=zf-C2H2=WD(100=2.7)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSRNOP00000019278