BtaINT0004724 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BGT4]
Coordinates
chr7:14308018-14308678:+
Coord C1 exon
chr7:14308018-14308078
Coord A exon
chr7:14308079-14308464
Coord C2 exon
chr7:14308465-14308678
Length
386 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTCCTTCTTGTTTTTTTTTGCAG
3' ss Score
0.72
Exon sequences
Seq C1 exon
GAACAACATGGGAAGATCATGACACTGAAGATCAGTACAGAAATCAGGGGAGAAAACTAAG
Seq A exon
GTGAGTGGCATTCACAGGAGAAAGCAGTATTTCACATCAGAATTATGTTATTGTACCAGATTTTAAAAAGAAACAGGGTAACCCATGCTTCAAATGTATTGCTTCTAAAAATTTTCACCAAATTACTTTCTTATATATGATATAATGTTCAGTGTTTGCAAAATAGTTCACTTGGAAACAATATTAATAAGCCCTATATATAAATATCACCATTTTGGTGAGTCCTCTTGTAGAGTACTCGGTATATTCAATTTCGAACAATTCACACGTGATAGGAAAAAACCTATGCTTTTGCTATAAATTGTAAAAGTGTAGCTGAAGCATTTTTAATAAATATGAAGTCATTAACAAAGAGATCATTAATACTTCCTTCTTGTTTTTTTTTG
Seq C2 exon
CAGAAGTCAGAAGGCAGAGAGAATCTGTGAAGGTAAAGAGGATAGTCCCTGTGGAGAAAACGTCAACCTTATTCCAAATCACAATCCGAACAAGAAAACTCTTTTCAGAGTAAGACCACGAGGACGCAAAGTATGTGGAAAAGACCTCATGCATCATTCCTCCCATAACAGGTCCACCAGAAGTCACATTGGACACAAGCCATATGAGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021529:ENSBTAT00000053377:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.611
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(7.7=2.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAACATGGGAAGATCATGACAC
R:
ACTCATATGGCTTGTGTCCAATGT
Band lengths:
270-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]