HsaINT0188480 @ hg19
Intron Retention
Gene
ENSG00000197933 | ZNF823
Description
zinc finger protein 823 [Source:HGNC Symbol;Acc:30936]
Coordinates
chr19:11832080-11835069:-
Coord C1 exon
chr19:11835009-11835069
Coord A exon
chr19:11834158-11835008
Coord C2 exon
chr19:11832080-11834157
Length
851 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
ATATTTCTTATTTGTTACAGAAG
3' ss Score
6.72
Exon sequences
Seq C1 exon
AAATGAAATGGGAGGACCAGAACATTGGAGATCAGTGCCAAAATGCCAAGAGAAATCTAAG
Seq A exon
GTAATTTGCACCCACAAAAGAAAGCTATGTCCCTGCAGTGGTTCATAGAATGATAAGAAAATTTTAAAAACGAGCAGAGAAAATGAACAAGCCCAGCTTAAATTTATTCATTCCAATAATTCTTTTTCTGACCAAGCACAGTGACTCGCACATGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGAGGATTACTTGAGCCTAGGAGTTTGAGATCAGCCTGGGCAACATAGTGAGATCCCCATCTCTATAAAAAAAAATTTTCCCGAGGAACATATAGTTAAATGTGACATAGCTATTCAGTCTTTGCAAAATAGTTCCCTTGGAAATGGTATTAAGAATCTCCATGTGGGCCAGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTAGGAGGCCAAGGCGGGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTGGCCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAATTAGCAGGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATTGCTTGAATCCGAGAGGCAGAGGTTGCAGTGAGCCGAGACTGTGCCATTGCACTCCAACCTGGGCAACAAGAGTGAAGCTCCGTCTCAAAAAAAAGAAAGAAAGAAAGAAAGAATCTCCATGTGAATATCACTGTTTTGCTAATAGCTGTGATGGGACCATCTTACACAGCACTGTCACTTCACATTCAAACAGGGGATGAAGCCTGTACTTTGCATGATAATGTTACAAATATAAATCTAGTACTTCAATATATAGAAAATCACTTATAAACAAACCTTTAGTAATATATTTCTTATTTGTTACAG
Seq C2 exon
AAGTCATACATGTGAAATTAAAGATGACAGTCAATGTGGAGAAACTTTTGGCCAGATTCCAGATAGTATTGTGAACAAGAACACTCCTCGAGTAAATCCATGTGACAGTGGTGAGTGTGGAGAAGTCGTCTTGGGTCATTCGTCTCTTAATTGCAACATCAGAGTTGACACTGGACACAAATCATGTGAGCATCAGGAATATGGAGAGAAGCCATATACACATAAACAACGTGGGAAAGCCATCAGTCATCAGCACTCCTTCCAGACACATGAAAGGCCCCCCACCGGAAAGAAACCCTTCGATTGTAAAGAATGTGCAAAAACCTTTAGTTCTCTTGGAAACCTCCGAAGACACATGGCGGCACACCATGGAGATGGACCTTATAAATGTAAGTTGTGTGGGAAAGCCTTTGTTTGGCCCAGTTTATTTCATTTGCACGAAAGAACACACACTGGAGAGAAACCGTATGAATGTAAGCAGTGTTCTAAAGCCTTTCCTTTTTACAGTTCCTATCTAAGACATGAAAGAATCCACACGGGAGAGAAAGCGTATGAATGTAAGCAGTGTTCCAAAGCCTTTCCTGATTACAGTACCTATCTAAGACATGAGAGAACTCACACCGGAGAGAAACCCTATAAATGTACACAATGTGGGAAAGCCTTCAGCTGTTACTATTACACTCGACTACATGAAAGGACTCACACGGGAGAACAACCCTATGCATGTAAGCAATGTGGGAAAACGTTTTATCATCACACAAGCTTTCGAAGACACATGATAAGGCACACTGGAGACGGACCACATAAATGTAAGATATGTGGGAAAGGCTTTGATTGTCCTAGTTCAGTTCGAAATCATGAAACTACTCACACTGGAGAGAAACCCTATGAATGTAAGCAGTGTGGGAAAGTGTTATCTCATAGCTCGAGCTTTCGAAGTCACATGATAACACACACAGGAGATGGACCCCAGAAATGCAAGATATGTGGGAAAGCCTTTGGTTGTCCCAGTTTATTTCAAAGACATGAAAGGACTCACACTGGAGAGAAACCCTATCAATGTAAACAATGTGGTAAAGCCTTCAGTCTTGCCGGTTCCCTTCGAAGACATGAAGCAACTCACACTGGAGTGAAACCCTATAAATGTCAGTGTGGGAAAGCCTTTAGTGATCTCTCTTCCTTTCAAAATCATGAGACAACTCACACTGGAGAGAAGCCATATGAGTGTAAGGAATGTGGGAAAGCATTCAGTTGTTTCAAATACCTTTCTCAACATAAAAGGACCCACACAGTAGAAAAACCTTATGAGTGTAAAACATGTAGAAAAGCCTTCAGTCATTTCAGTAACTTAAAAGTCCATGAAAGGATTCACTCTGGAGAGAAGCCATATGAATGTAAGGAATGTGGAAAAGCATTCTCTTGGCTCACTTGCCTTCTACGACATGAAAGAATTCACACTGGAGAGAAACCCTATGAATGTCTACAATGTGGTAAAGCCTTCACTCGTTCCCGTTTCCTTCGAGGACATGAAAAAACTCACACTGGAGAGAAGCTGTATGAATGTAAGGAATGTGGGAAAGCATTGAGTTCTCTCCGTTCCTTGCATAGACATAAAAGGACTCACTGGAAAGATACTCTCTAAATGTATGGAATGTGGGAAAACATTCAGTACTTTAATTTCAGAAACTTGAAAGAACTCACTTTGGAGATAGACCCTATGAATGTAAACATGGGATAAAGCCTTAAGTAGTTTCAATTTTTTTAAATACAGTTATCCCCCAATATATTGCAGGGGATTGGTTCCAGCACCCTCTAAATCCACAGATGCCAAGTCCTTTGTTATATGGCATATTTGCATGTAACCTATGCATATCTTCCAGTATACTGTGTAAATCATCTCTAGATGACTTTTAATACCTCATGCATTGTAAAAGCTATGTAAATAGTTGTTTGATTGTATTGTTTAGAGAATCATGACAAGAAAAATAGTCTCTACATGTTCGATGCAGACACAACCATTGCAGGCCCACCTACGTGGTATATGTCACCCAGAACATTAAAATTTGTTTTAACATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197933-ZNF823:NM_001080493:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF079757=C1_4=WD(100=10.4),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF127602=Zn_Tnp_IS1595=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=4.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGGACCAGAACATTGGA
R:
GAAGGGTTTCTTTCCGGTGGG
Band lengths:
354-1205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)