HsaINT0188480 @ hg38
Intron Retention
Gene
ENSG00000197933 | ZNF823
Description
zinc finger protein 823 [Source:HGNC Symbol;Acc:HGNC:30936]
Coordinates
chr19:11721993-11724254:-
Coord C1 exon
chr19:11724194-11724254
Coord A exon
chr19:11723343-11724193
Coord C2 exon
chr19:11721993-11723342
Length
851 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
ATATTTCTTATTTGTTACAGAAG
3' ss Score
6.72
Exon sequences
Seq C1 exon
AAATGAAATGGGAGGACCAGAACATTGGAGATCAGTGCCAAAATGCCAAGAGAAATCTAAG
Seq A exon
GTAATTTGCACCCACAAAAGAAAGCTATGTCCCTGCAGTGGTTCATAGAATGATAAGAAAATTTTAAAAACGAGCAGAGAAAATGAACAAGCCCAGCTTAAATTTATTCATTCCAATAATTCTTTTTCTGACCAAGCACAGTGACTCGCACATGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGAGGATTACTTGAGCCTAGGAGTTTGAGATCAGCCTGGGCAACATAGTGAGATCCCCATCTCTATAAAAAAAAATTTTCCCGAGGAACATATAGTTAAATGTGACATAGCTATTCAGTCTTTGCAAAATAGTTCCCTTGGAAATGGTATTAAGAATCTCCATGTGGGCCAGGAGCGGTGGCTCACGCCTGTAATCCCAGCACTTTAGGAGGCCAAGGCGGGTGGATCACCTGAGGTCGGGAGTTCAAGACCAGCCTGGCCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAATTAGCAGGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATTGCTTGAATCCGAGAGGCAGAGGTTGCAGTGAGCCGAGACTGTGCCATTGCACTCCAACCTGGGCAACAAGAGTGAAGCTCCGTCTCAAAAAAAAGAAAGAAAGAAAGAAAGAATCTCCATGTGAATATCACTGTTTTGCTAATAGCTGTGATGGGACCATCTTACACAGCACTGTCACTTCACATTCAAACAGGGGATGAAGCCTGTACTTTGCATGATAATGTTACAAATATAAATCTAGTACTTCAATATATAGAAAATCACTTATAAACAAACCTTTAGTAATATATTTCTTATTTGTTACAG
Seq C2 exon
AAGTCATACATGTGAAATTAAAGATGACAGTCAATGTGGAGAAACTTTTGGCCAGATTCCAGATAGTATTGTGAACAAGAACACTCCTCGAGTAAATCCATGTGACAGTGGTGAGTGTGGAGAAGTCGTCTTGGGTCATTCGTCTCTTAATTGCAACATCAGAGTTGACACTGGACACAAATCATGTGAGCATCAGGAATATGGAGAGAAGCCATATACACATAAACAACGTGGGAAAGCCATCAGTCATCAGCACTCCTTCCAGACACATGAAAGGCCCCCCACCGGAAAGAAACCCTTCGATTGTAAAGAATGTGCAAAAACCTTTAGTTCTCTTGGAAACCTCCGAAGACACATGGCGGCACACCATGGAGATGGACCTTATAAATGTAAGTTGTGTGGGAAAGCCTTTGTTTGGCCCAGTTTATTTCATTTGCACGAAAGAACACACACTGGAGAGAAACCGTATGAATGTAAGCAGTGTTCTAAAGCCTTTCCTTTTTACAGTTCCTATCTAAGACATGAAAGAATCCACACGGGAGAGAAAGCGTATGAATGTAAGCAGTGTTCCAAAGCCTTTCCTGATTACAGTACCTATCTAAGACATGAGAGAACTCACACCGGAGAGAAACCCTATAAATGTACACAATGTGGGAAAGCCTTCAGCTGTTACTATTACACTCGACTACATGAAAGGACTCACACGGGAGAACAACCCTATGCATGTAAGCAATGTGGGAAAACGTTTTATCATCACACAAGCTTTCGAAGACACATGATAAGGCACACTGGAGACGGACCACATAAATGTAAGATATGTGGGAAAGGCTTTGATTGTCCTAGTTCAGTTCGAAATCATGAAACTACTCACACTGGAGAGAAACCCTATGAATGTAAGCAGTGTGGGAAAGTGTTATCTCATAGCTCGAGCTTTCGAAGTCACATGATAACACACACAGGAGATGGACCCCAGAAATGCAAGATATGTGGGAAAGCCTTTGGTTGTCCCAGTTTATTTCAAAGACATGAAAGGACTCACACTGGAGAGAAACCCTATCAATGTAAACAATGTGGTAAAGCCTTCAGTCTTGCCGGTTCCCTTCGAAGACATGAAGCAACTCACACTGGAGTGAAACCCTATAAATGTCAGTGTGGGAAAGCCTTTAGTGATCTCTCTTCCTTTCAAAATCATGAGACAACTCACACTGGAGAGAAGCCATATGAGTGTAAGGAATGTGGGAAAGCATTCAGTTGTTTCAAATACCTTTCTCAACATAAAAGGACCCACACAGTAGAAAAACCTTATGAGTGTAAAACATGTAGAAAAGCCTTCAGTCATTTCAGTAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197933:ENST00000431998:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=NA C2=0.074
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGGACCAGAACATTGGA
R:
GAAGGGTTTCTTTCCGGTGGG
Band lengths:
354-1205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains