MmuINT0180014 @ mm10
Intron Retention
Gene
ENSMUSG00000024298 | Zfp871
Description
zinc finger protein 871 [Source:MGI Symbol;Acc:MGI:1921793]
Coordinates
chr17:32771236-32777217:-
Coord C1 exon
chr17:32777157-32777217
Coord A exon
chr17:32776009-32777156
Coord C2 exon
chr17:32771236-32776008
Length
1148 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TACATTTGCTTTCTTCGCAGTGG
3' ss Score
7.75
Exon sequences
Seq C1 exon
GGAGCAGTTTGGAGCACCATATCATTGAAAATATATACCGAAACTCCTGGAAAAAACTAAG
Seq A exon
GTAATACGGACCTCAAGAGACAGCCATACTCTTTATAAAGTAGTAAAAAACACAGGCATATCCAGTTTCAAACTCAACTACCCTCAGGGAATTTTCTTCAACACTAGAAACATTAAACATCCTGAAAATGTTATAAGGATTCCAATACTGGAAATAACGTGAGCATCATTGTGCCCAAAGTGATTTTTGTCATACTTAATATGTACCAACTTTGTTCCATACAATATTCTTAAATTTTAAATATTGACTTAGTCACTCACTTTATGTATAAAATATATGTGACACAAAAATCAGGGGTCCTTTTAGGCTTGGACTAAATATCAAAATCTCATTGTGGCCCTTCGAGTGGTTTAGAATGTCATGTGAGTGTGATTATGATTATCCACCATTATTTATTTGTTTTAGTTTAGTTCTGAGGGTTATAGCATCACATGGATTCTGTGTTCAGTAACCTTCCTTTCCCTTTTTTTTTTTATTTTTTTATTTTGAGATAGTATTCGCCTAGTTTAGACTAGTCTGGCCTCGAACTCAGAACCTGCCTCTGCCTCCCAAGCATTAAGGTTAAAGGCATGCGCTACCATGCCTGACGTCCAGTAGCCTTTGTAGCAAGTTTTCTTCAGAATTCAACATGAAGCATGCTACTGTTTCATGGACTTGAGTTACCTCTTCCCAGATTATTCTTTTTTTTTCCCCTCCAAGAGTCACTTTTGGTTTGGTTTGGTTGCTTTATACGCAGAAGCACATCTCTTGTCTAAGGAGAATTTGTTTCCATCTTAGACTTAAACTTCTTAAGTTTTAAGAAAACCTATATGCCTCCTTTGGTTCTAAAGACCTTGCTAATTATAGCCAGCAAAAATGGCCTTGCACAGCAGCCTCTGAGACAAAACTTGCTGATAGACGTCCTGTTTTTTAAGCAGGCCTCCCCAGGTGCCAAGATGGCATTGAGAATTGAAATAGATATTTTAATGTTATGTAAGACATGTTTGCTAGACCTGTGTAGGTGATATAACAGCCACCCGTGAATACTACTGTTTTTGGTATAGTTGTCCTCAGAGTTGCTGAGTGTGTTAAAAAACTTCTGACAGCATAGAGCCAACATTTCTGCTGGTAGGTAAAATATTAGTGATGTACATTTGCTTTCTTCGCAG
Seq C2 exon
TGGTCAAGTGGTGGAGGGACTCTATGACTGTAAAGATGACCATCAATGTGCAGAAATCTTCGACTTCACTACACACAGTATTGTAAACCAGAACTCCTTGCCAGGAGTGTATATATGTGAAAACAGCGGATGTGCAACGGTAGTCATTGGCCATTTATCTCTAAGTGTACTTCTTAAACCTGACCCAAAGCATGAATCGTGCGAAGATCAGGAATATGGGAAGGAATTATACAATATGGAATATGGGGCCCCCTCCAGTTCTCTCACATCATTTGAGAACTATGAAAGTACTTACACTGTAGAGAGAATCTATAAAACTGAGCGTTGTGACGAAGACTATAGATATGGCCAAAATGTTGAAAAGACTTTCACTGAAGAAAAGCCCTTTGAGTGTAAGCAGTGTGGGAAGTGTTTCAGTTCCTCCAGGTATTTTCGAAGGCACGAACGACGTCATCGGGCCAAGAAATGCTATATCTGTAAGCAGTGTGGGAAAGCCTTTGCTTTTCCCACTTACCTACAAACACACGAAAGAATTCACACGGGGGAGAAACCGTACGTGTGCTTGCAGTGTGGGAAAACCTTCGCTCATTCTCGTTCCCTTAAAACACATAAAAGAACTCACTCGGTTAGGGACCTCTTTGTGTGCAATTACTGTGGGAAAACCTTACGTCATTACAGCTCTCTTCAAATTCATACAAGAATTCACACGGGAGAGAAACCTTATGTGTGTAAACCGTGTGGTAAAGCCTTCATTACTTACCGCTCCTTTCGAATACATGAAAGAATTCACACTGGAGAAACACCTTATGAATGTAAGCAGTGTGGCAACACCTTCATGCGTTGGATTCAGTTGCGAAAGCATGAAATAATTCACAGTGGGGTGAAGCCCTATGCTTGTAAGCTGTGTGGAAAAAGCTTCACTTGTTCTGGGTCCTTGAGAACACATGAAAGGATTCACACTGGGGAGAGACCCTATGTGTGTGACCAGTGTGGATATAGCTTTACTCGGTTAAATTCGCTTTTAAGGCATAAAATAACCCACACCGGTGAGAAGCCCTACGTGTGTAATCATTGTGGGAAGACTTTCCCTCGATCTGCGTCTCTTCAAAGACATGTCAAAATTCACACCGAGGAGAAACCCTATGTATGCAAACAGTGTGGCGTTGCCTTCCCTAGTTCTGCTGACCTCTTAGAACACGAGCAAACCCATATTGACGAGAAACCGTACATATGTGAGCAGTGCGGCAACGCCTTCGTGCTGTGGAGTCAGTTTCAGAAGCATAAAGCCCTTCACGCCGTCCCAGTGTCCTACGTGTGTAAGCAGTGTGGGAAGAGCTTCACTTCCTCGAGGTCCCTGAAAACCCACGAGAGAATCCACACGGGTGAGAAGCCTTACGAGTGCAAGCAGTGTGGGAAGACCTTCCTGTGGTCCTACTCCCTACAGAGACATGAAAAGACTCACACGGACGGGAAGGTCCACGTGTGTAAGCAGTGCGGGGAAACTTTCCCTTACGACAGTCATCTCCAGGTGCATGAGAAACTGCACTTTGACGATGAGCCTTTTAATTGTAAGTACTGTGGGAAGCCCTTCTTCACTCTGAACCATTTGCATAGACATGAATTACTTCACACTACCCTGGATTCCAGTGTTTTTTAGTCATGGGAGGATTTTTTTCCCCCGCTTTGTGGTTTTCATAGAAATAAGAGAAATCATACTGGAAAAAGACTGGATTTGTGCTAGCAATGTGGAAAACCTTTTGATTTGTTTCATTGAAACAAACGTGCGATGTCACAATGAGGAGAAACCTTTTTTTAAAACGAAAATCAATGTACAAATGGTTTTCTGAGCTTAAAGCTCCTTGGAATGCATCAAAGAGAAACGGGCCTGTGACTGCGAGCAGTGTGGTCGAGTCATCTGCAGTCCTGGATCTTGGAGGAGACAGGAGAAAACTCAAGCTGTAGAGAAACTTTTATGTGTATATGTGGTGTTGTATTAAAAAAAAGCCCTTTCTGCTTCCCCATTCCCTCTGAATATGTGGAAGGAGTCACTGGAGAGAAACCCTTCATAGCTAGGCAATCTTGGATAGTCTTGAGTTATCACATCCTCTTACAGACATGAAAGAACCTACTGTAGAGAAATCTTAAAAACGGGATTTGTGAACTCTTCATTATCAGCTTCATAGAACTAACAAGAATGTACGTGGGGAGAATTCCTATTAGTGGAAACCTCTATGAACACCATTTGGTTCAATGAACAGACAAGGAAAGAACTTGATCCGGAGTGCTAATCTTCTCAAAAGAGATGTTCAAGGTTTCATTTGGCACAGATGGTAACACATATCGGATGAAAACTTTTGCTGTTGAAAAACATTGGAAAATCTAGAGCAAAGTCCTTTGAAATTTTTTTCATGTTTAATCTGATAAATGTCAGTATTATGAAGGACTGGACATATTTTATTTTATTATTTTTTTTTTGTAGCATGCTCCAGGAAATGCACACTCTGGTGAGAATGTTATCAGTACAGTATTTTGTATTTATTGAAATGTTTCAGGGGCTGATAGGGATGAGTTAGCCTTTAAGAGCATCTTCTGCTCCTTCCAAAGGACATTGAGTTGGCCTTTAAGAGCATTTGCTTTTTAGCACCACGTCACAGGGCTCACAACTGCATGTGACTCTAGTTACAGGAGACACACTTGTACACATAAAAATAAAGCTTAAATATTTTTCTAGTCTTTTTTTTTCCAAAAAAAAAAAAACTTTTGTTGTATATCATGTTTACCCAGAACTGTTAATCTTCCAGCTTCCAGCTTTTGAATGTTTAAAATGAAATGTCTCTGCTTCCACATTCACCGTCATTAGCTCCTGCTTGAGAGTCCATCTCTTGGCTTGTTTTTAAATTTTACTCTACAAAAGCAAGCAGTGAGCAGAGCATTGAGCAATGTGGAATGGCGGCCTAATTACATGAACTGCAGACCAGTGAGACCTACATATGAAAAATGCTCACAGGAATAGAAAGTGCATTTTATTACATTTGTGACACTTCTTAAAGCAATCATGTATTAGTTTAATAGGTGATATCTTTTTGTATTTAATAAGTAGATGCTTCTCATTGTAAATTATGTTAGATTCATTGGTAAATTGATATTTGAAGTATGCCAGTCCACATAAATGTCTTTAAATGCATTTTAGTATTTATGTGTGAGCATGTGAGGGTATGTAGACATATGCCCATGGAGGCTAGAGTGCTTTGGAGATAGTATTACAGGAATTGTGACATGTTTGATGTGTGTCATGGGATCAAAATCCTAGTCTTCATGATAGAACAGTAAGTACTCTTAACTGCTGAGCCCCCTCAAACCCTGCATAAGTGTATTGTTTTTCAATCATGTTTAATGGGTAGTTTAAAAAATGGCTTTGTGAGTATTGGGATAGTCCTATTGGTTTTATTTGGCTAATTATAAGCATTTTGTGTATATGCTTATTTTTCACGAAAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTACGTAGACGAGTGTGTTTGGAGGGCATTGTTTATGTGTTGCTGGTATGGTTGGTGGTGTTCACAAAGTGAGCAAAGTAATATATTGGGTGTCTTGCTCTATCTATCACTGTTATTCCCCCTAAGACAGAGTCTCACTGAGCCTGGAGCTGGGCAGCAGGAGCATTTCTTGTGTCTGTCCCCCCAGTGCTGAGTATAGAGACACTCTAGAAGTTGGCTCTGGTTCTTCCTCCCAGCATCATGTTCCCAGAAATAAGACTCAGACTCAAAATATATTTACAAATGCCTTAGCCATATTGCTAAGCTCTTTTCTGGCTAGATCATAACTAAAGATAACCCATTTATTTTAACCTCCATTCTGCCATGTGGGTGCTTACCTGTGCTGAGGTACCAAGCACCTGTCTAGTTACATCTTCCTGGGCAAATCTCCTACCTCTGGCTCTATTCCAGAATCCTTTCTGCCTCCTGGATGTCCCTCCTTGCATTTCCTGCCTAAGTCACGGCCCATGAGCTTTTTGATTGATCGGTACAATACAGAAGGTATCTTCTCTATAGATAACTCAGTCATTCCCAGCTTCTTATTAATAGGGAATGAAACTTGAGTCCTTATGACTGCACAGCAAGTGGCTCCCCACGTAGCCACCTCCTCAGGCCTAAACCAGTCTTAAATTGATTGTTTCTTTTATGTTGCTCTCTCGTGTGTTCTCACAATCCTGAGTATCTGTTCTTTTTGACTTTGAAGTATTTTCAAAATATTTTTTAGAATAGCAAATGTTAGGGTTGATTTTGTTTTGGTTTTCCTATTCAGAAGGTAGGAATAAGTATATTGTAATCATGGGTCAGCCTGTCTTTCCAAGTTGACTTATTTCTTTTGAGAATTTCATACACATATACAAGAAAAGAGAATCATGCATATCCACTGTTTCTCCTTCCAAGCCTTCCTATTTCTCCCCAACACCCCCTCTTAACTTTGTCTTTAAAAATAACCTGCTAGTCTAGTTAGTGTCGTTCATACATGCATGAGTCTGGGGCCATCTACTGGAGGATGGGGGACCTACCAGTAGTTACATCTTCACTAGTCATTCTCCACCCCCCAGCAGCTATTCACTACCTGTAGCTTCTCAGTAAGGGAGATGCTGGGATCTGGGCTGACTTAATCTTACAATGTAGGCCTTGTGCATGCAGTCACATTTGCTATGAGTTCATGATTATAGTAACCATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024298:ENSMUST00000159086:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.7),PF138941=zf-C2H2_4=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGTTTGGAGCACCATA
R:
AGTTCTCAAATGATGTGAGAGAACT
Band lengths:
342-1490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types