HsaINT0186220 @ hg19
Intron Retention
Gene
ENSG00000105708 | ZNF14
Description
zinc finger protein 14 [Source:HGNC Symbol;Acc:12924]
Coordinates
chr19:19821281-19824960:-
Coord C1 exon
chr19:19824900-19824960
Coord A exon
chr19:19823899-19824899
Coord C2 exon
chr19:19821281-19823898
Length
1001 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTGCTATTCATTTTTTACAGATG
3' ss Score
9.58
Exon sequences
Seq C1 exon
GAAAAAAGTGGGAAGACCAGGACATTGAAGATGACCACAGAAACCAGGGGAAAAATCGAAG
Seq A exon
GTGAGTTGCATCCACAGAAAAATAGTGGCCCGTGGGGGAATTTCAAAAGAAAGCAAGCAAAACAATTAAGCACAGCTTCAAATTTATTTATTCCTAGAAAACTTTCACTGAAAATGTTTTCTTAAAAACATCATAGATGTTCAGGATGTGAAAAATAAATCACTTCGAAATAGCATTTAGAAACCCCTTTTATAAATATTATTATTTTGGCCAGGCACAATAGTTCATGTAGGTAATCCCAGCAGTTTGGGAGGCTGAGGTAGGAGGATCACTTGAGGCCTGGAATTCAAGACCAGCCTGGGTAATATAGCAAGACCTCATCTGGGGAAAAAAAAAAAAAAAGGCCTGGCACAGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGCCAAGGCAGGCAGATCATCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGCTGTGGTGGTGTGCTCCTATAATCCCAGCTACCCAGGAGGCTGAGGCAGGAAAATTGCTGGAACCCAGGAGGCAGAAGCTGCAGTGAGCCTAGATCGTGCCACTGTACTCCAGCCTGGGCAACAGAGCAAGACTCCATCTTGGAAAAAAAAAAAAAATTAGCCAGGCATGGTGGCACTCTCTAGTCCCACCTGCTCAGGAGGCTGAGATGGGAGGATTGGTTGAGCCCAGGAATTCAAGGCTTCAGTGAGCTGTGATCATGCCACTGTACTCCAGCCTGGGTGAGAGAATGAGACTCCATCTCTTATTTAAACAACAACAACAAAAAAATTGACTGTTTTGATCATAACTATGGTTGAGTCTTCTTCCAGAGCATTGAATATATTAACTTTAAAACAATTCAGACAGGGCAGATATCCTATACTTTTTCTGAAAATGGTTAAAATGTAATTCTCATACCTACTAATAAATACAAAATAATTAAAAAGCCACTAATAATGTGCTATTCATTTTTTACAG
Seq C2 exon
ATGTCATATGGTTGAGAGACTCTGTGAAAGTAGAAGAGGTAGCAAATGTGGAGAAACCACTAGCCAGATGCCAAATGTTAATATCAACAAGGAAACTTTTACTGGAGCAAAACCACATGAATGCAGCTTTTGTGGAAGAGACTTCATTCATCATTCGTCCCTTAATAGGCACATGAGATCTCACACTGGACAGAAACCAAATGAGTATCAGGAATATGAAAAGCAACCATGTAAATGTAAAGCAGTTGGGAAAACCTTCAGTTATCACCACTGCTTTCGCAAACATGAAAGAACTCACACTGGAGTGAAGCCCTATGAATGTAAACAGTGTGGGAAAGCCTTTATATATTACCAGCCATTTCAAAGACATGAAAGGACTCATGCTGGACAGAAACCCTATGAATGTAAGCAATGTGGAAAAACCTTTATATATTACCAGTCTTTTCAAAAACATGCTCATACTGGAAAGAAACCCTATGAATGTAAACAGTGTGGGAAAGCCTTTATATGTTACCAATCTTTTCAAAGACACAAAAGGACTCACACTGGAGAGAAACCCTATGAATGTAAGCAATGTGGTAAGGCTTTCAGTTGTCCCACATACTTTCGAACTCATGAAAGAACTCACACTGGAGAAAAACCCTACAAATGTAAAGAATGTGGTAAAGCCTTCAGTTTTCTCAGTTCTTTTCGAAGGCATAAAAGGACTCATAGTGGAGAGAAACCCTATGAATGTAAAGAATGTGGAAAAGCCTTCTTTTATTCTGCAAGCTTTCGAGCACATGTAATAATACACACTGGGGCTCGACCTTATAAATGTAAAGAATGTGGGAAAGCCTTCAACTCTTCTAATTCCTGTCGAGTGCATGAAAGAACTCATATTGGAGAAAAACCATATGAATGTAAACGATGTGGCAAATCATTCAGTTGGTCCATTTCTCTTCGATTGCATGAAAGAACTCATACTGGAGAGAAACCTTATGAGTGTAAACAGTGTCATAAAACCTTCAGTTTTTCAAGTTCCCTTCGAGAACACGAAACAACTCACACTGGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAACCTTCAGTTTTTCAAGTTCCCTTCAAAGACATGAAAGGACTCACAATGCAGAGAAACCCTATGAATGTAAACAGTGTGGGAAAGCCTTCAGGTGTTCAAGTTATTTTCGAATTCATGAAAGGTCACACACTGGAGAGAAACCCTATGAATGTAAACAGTGTGGAAAAGTTTTCATTCGTTCCAGTTCCTTTCGACTGCATGAAAGAACACACACTGGAGAGAAACCCTATGAATGTAAACTATGCGGTAAAACCTTCAGTTTTTCAAGTTCCCTTCGAGAACATGAAAAAATTCACACTGGAAATAAGCCTTTTGAGTGTAAGCAATGTGGTAAGGCCTTCCTTCGTTCCAGTCAAATTCGATTGCATGAAAGGACTCACACTGGAGAGAAACCGTATCAATGTAAACAATGTGGAAAAGCCTTCATTTCTTCCAGTAAATTTCGAATGCATGAGAGAACTCACACGGGAGAGAAACCCTATCGATGTAAACAATGTGGGAAAGCCTTCAGATTTTCAAGTTCTGTTCGAATTCATGAAAGGTCTCACACTGGAGAGAAACCTTATGAATGCAAACAATGTGGAAAAGCCTTCATTTCTTCCAGTCACTTTCGACTGCATGAAAGGACTCATATGGGAGAGAAAGTCTAAGAATATAAGCAACATTCTGAAGCCTTCGGTTGTTCCAGCTCCTTCTGAATACACAAAAGAGTTCATACTGGACAGAAGCTGTGTGAATACAAACATTGTTCTAAAGCCCTTAATTGTTCCAGTTTCTTTTGAGCACGAAAGAATTCCCACTGGTGAGAAACAGTATGAATGTAAACATTGTGATTAAGCCTTCAGTTGACCTAATTCATTTCAAAGACAGGACTCGTGCTGCAGTGAAATCTGTTTTGTTTTTTGTTTTTTGTTTTTTTAAAAAAGGCCAAGCTTGTTGGCTCATGCCTATAGTCCCAGCACTTTGGGAGGCCAAGGTGCAAGGCAGGCAGATCATTTGAGGTCAGAAATTCGAGACCAGCGTGGTCAACATGGTGTAACCCCATCTCTACTAAAAATTACCAAAAAATGAACCAGGCATGGTAGTGCATGCCTCTAATCCCAGCTACTCAGGAGGCTAAGGCAGGAGAATCACTTGAACCTGGAGACAGAGGTTGCAGTGAGCTGAGATCACGCCACTGCATTCCAGCCTGTGCGACAGAATGAGACACTGTCTCAAGAAAAAATAAAAGTGGGAAAATCTTCCAACTGTCCTCTAGAGTGTGAATATATGAAAGGAGTCAGAGTGGGGTGAAAGTCTATAAATGTAAGACATTTGGGAAAGCCTTCACACAGCCTTTTGAGCACACATGAGAATGTATACTGGAGAGAAACCCTATAAATATTAAGAATGTGGGAAATTCTTCATCCTAGTTCTTTTGTTGTTGTTGATGATACAAAAATATTTTCATTTAATAAAGATTGTCAGGTTATATTTAATAAGAAAGAAAGTATCATGTAAACAGCCCAGTAATAAAATTTTACAATCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105708-ZNF14:NM_021030:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.060
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF054957=zf-CHY=WD(100=14.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACCACAGAAACCAGGGGA
R:
TAGGGCTTCACTCCAGTGTGA
Band lengths:
346-1347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)