RnoINT0168722 @ rn6
Intron Retention
Gene
ENSRNOG00000004947 | Zfp871
Description
zinc finger protein 871 [Source:MGI Symbol;Acc:MGI:1921793]
Coordinates
chr7:15024693-15027933:-
Coord C1 exon
chr7:15027653-15027933
Coord A exon
chr7:15026549-15027652
Coord C2 exon
chr7:15024693-15026548
Length
1104 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
GCACATTTGCTTTCTTACAGTGG
3' ss Score
7.3
Exon sequences
Seq C1 exon
AAGATGTGATGCAGGAAACCTTGAGGAACCTGGCTTCTATAGGTAAGTACGTCGTCATCCCTTCAGTCAGTCAATCAAAGGAAACGTGCTTCTGCATGAGTTTACATATGGTAAAGAGATTTGAACGGATACTTGAGATGGGTCACTTTATACTGCAAATTTTGAATGTATTTACTATGTTGTCATAGTTTATAGTGATTCTACTTTGATTGTATTTTAGGAAGCAGTTTGGAGCACCATATCATTGAAAATATATACCGAAATTCCTGGAGAAAACTAAG
Seq A exon
GTAATACAGGCCTCACGAGACAGCCATAGTCCTTAGGGTTGTGTACTTGTACACTTTATAAAGTAGTAAAAGACAGAGGTATCCAGTTTCAAGCTCAACTACTCTCAGGAAATTTTCTTCAACACTGGAAACTTCAGACATCCTGAAAGTGTTACAAGGATTCCAATCTGGAAATAACTGGAACACCATTATGCCCAAAGTGATTTTTGTCATACTTAATATGTACCAACTTTGCCCCATGCAGTATTCATAACAGGAAATCAGATTTCTTTTACAGCTTGGACTAAGCATCAAAAATCTCATTGTGGACTTTCCAGTAGTTCAGAATGTAATGTGATTGTGAGCACCCACCTTTATTTATTTAGTTTAGTTTAGTTCTGTGAGGGGGGATAGCATCAAATGGACTCTGTGGCCATCTTTCTTCTTTTTTTGAGACAGTACTTTTTTGTCTAGTCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAGCTCAGAGATCCACCTGCCTCTGCCTCCCAAGTGCTAAGATTAAGGATGTGTGCTACCATGCTCGGCTTCCAGTAGCCTTTGTAGCAAGTTTTCTTCAGAATTCAATATGAAGCTTGCTTCTGTTTCATGGACTTGATACCTCTTCCCAGATTACTCTTTTTTTTCCCTCCAGGAGTCACTTTTGGTTTGGTTTGGTTTATTTATGCACATAAGCACATCTCTTGCCTAAGTAGCATTGTTTCCATCCCAGGTATAAAGTCCTTAGGTTGTAAGAAGCGCTGCGTGCCTTTGCTTATGGTGGCCAGCAAAAATGGCCTTGCATAGCAGCCTTTGAGACAGAACTTGCTGATAGACATCCTGTTTACGAGCAGGCCTCCCCTGGTGCCAAGATGGCATCAAGAATTGAAATAGATATTTTAATGTTATATAAGACATGTTTGCTAGACCCGTGCAGCTGCTGTAACGGCCACCTGTGAGTACCACTGTTTTTGTTAGAGTTGTCCTCGGAGTGGCTGAGCATTCAGGTAACTGTGCTAAAGAATTCCGACAGCGTTTCTACTGGTAAGTGGTTAAAGTGGTAGTGATGCACATTTGCTTTCTTACAG
Seq C2 exon
TGGTCAAGTGGTGGAGGGGCTCTATGACTGTAAAGATGACCATCAGTGTGCAGAAATCTTCGACTTCACTACACACAGTATTGTAAACCAGAACTCCTTACAAGGAGTGCACATATGTGAAAACAGTGGGTGTGCAACAGTAGTCATTGGCCATTTGTCTCTGAGTGTGCTCCTTAAGCCTGACACAGAGCGTGCGTCATACGAAGAGGACTACGGAAAGGAATTGTACAGTTCAGAGCAACTTGGGGCAGCCTCCAATTCTCTCACATCATTTGAGAACTATGAAAATACTTACACTCTACAGAGACTGTATAAAACTGAGCAATGTGATGAAGACTATCGATATGGTCAAAATGTTGAAAAGACTTTCAATGAAGACAAGCCCTTTGAGTGTAAGCAGTGTGGGAAATGTTTCAGTTCCTCCAGGTACTTTCGAAGGCATGAACGACGTCATCGTGCTAAGAAATGCTATATCTGTAAACAGTGTGGGAAAGCTTTTGCTTTTCCCACCTACCTACAAACACATGAAAGAATTCACACCGGGGAGAAGCCCTATGTGTGCTTGCAGTGCGGGAAAACCTTTGCTCATTCTCGTTCCCTTAAAACACATAAAAGAACTCACTCTGTTAGGGACCTCTTTGTGTGCAATTACTGTGGGAAAACCTTACGTCATTACAGTTCTCTTCAAATTCATACAAGAATTCACACAGGAGAGAAACCTTACGTGTGTAAACCATGTGGCAAAGCCTTCATTACTTATCGTTCCTTTCGAATACATGAAAGAATTCACACTGGAGAAACACCGTATGAATGTAAGCAGTGTGGAAACACTTTCATGCGTTGGATTCAATTACGAAAACATGAAATCATTCACAGTGGTGTGAAACCCTATGCTTGTAAGCTATGTGGAAAAAGCTTCACTTGTTCTGGGTCCCTGAGGACACATGAAAGAATTCACACTGGGGAGAGACCCTATGTGTGTGACCAGTGTGGTTATAGCTTTACTCGGTTGAATTCGCTTTTGAGACATAAAATAACCCACACTGGTGAGAAGCCCTATGTGTGTAATCATTGTGGGAAAACTTTTCCTCGCTCTGCTTCCCTTCAGAGACATGTCAAAATTCACACCGAGGAGAAACCTTATGTATGCAAGCAGTGTGGGGTTGCCTTTGCTAGCTCTACTGACCTTTTAGAACACGAGCAAACTCACATTGATGAAAAACCTTACATCTGTGAGCAATGTGGGAATGCCTTCGTGCTGTGGAGTCAATTTCAGAAGCATAAAGCACTTCACGCTGTCCCGGTTTCCTACGTGTGTAAGCAGTGTGGGAAGAGCTTCACTTCTTCGAGGTCACTGAAGACACACGAGAGAATCCACACTGGCGAGAAGCCCTATGAGTGTAAGCAGTGTGGGAAAACCTTCCTGTGGTCTTATTCCCTTCAGAGACATGAAAAAACTCACACTGATGGGAAGCTCCATGTGTGCAAACAGTGTGGGGAAACTTTCCCTTATGACAGTCATCTGCAGGTGCATGAAAAACTGCACTTTGACGATGAGCCTTTCAATTGTAAGTACTGTGGGAAACCCTTCTTCACGTTGAACCATTTACATAGACATGAATTACTTCACACTACCCTGGATTCCAGTGTTTTTTAGTAATGTGAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCTCGGGGGCTTTCATAGAAAAAGCAAAATGATACTGGAAAAAGACTGGATTTGTGTTAGCAATGTAGAAAAACCTTTTGGTTTGTTTCATTGAAACACATGAGATGTCACGTTGAGAAGAAATCTTTTTTAAAAAAAATAATGAAATATACAAATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004947:ENSRNOT00000006697:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.002
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF054957=zf-CHY=WD(100=15.2),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF054957=zf-CHY=WD(100=14.1),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.5),PF0109613=TFIIS_C=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.7),PF138941=zf-C2H2_4=WD(100=4.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGGAAACGTGCTTCTGC
R:
ACTGTTGCACACCCACTGTTT
Band lengths:
348-1452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]