Special

MmuINT0179598 @ mm10

Intron Retention

Gene
ENSMUSG00000068959 | Zfp619
Description
zinc finger protein 619 [Source:MGI Symbol;Acc:MGI:1917477]
Coordinates
chr7:39534115-39540420:+
Coord C1 exon
chr7:39534115-39534175
Coord A exon
chr7:39534176-39534738
Coord C2 exon
chr7:39534739-39540420
Length
563 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TCTCATTCATCCTGCAATAGGAA
3' ss Score
6.44
Exon sequences
Seq C1 exon
GAATCAAATCAGAATACCAGACCATTGAAGACCAGTATAAACAGCCTGGGAAAAATATAAG
Seq A exon
GTAAATTACATGTATTAGCTGGGGGAAAAATATCTTTTGAGAGAATCTTCATATGTTATGAAAATTTATGAACAAGTCAGCAAGGCAAACACAAATTTAAATTATTCACCATTATAAAAATTTTACAAAAATATGTGATTCCATGTAAGAAAGCTGTCCAGATTTGAAAACAGTTCACTTGGAAAAAGTACTGAGAAAAATGCATGTATGATCTTTGCTGTTTTGGGAATAGCTTGAAGAGCCGTGTTACAGTATCACCAATCTATTTAGTTAGAGAATATTTAAATATTGCAGACGGCATACACTTTCTCTGATTTAGGCAATGGTGGGAGACTAAGACCTACCAATAGCTAAATGATTATCAGTACAGCAAACATTAGTAATATTCCTGCCCGTGTTTACAGCCGTCAAATGCTAGGTTTGGTCTGTGAGAATAAAGAAGGCAATGCATTTGGAGAAACCTCCAAGAAATCAAATATCAATAGAAGTCTAGAGATTTCTGCTCAAGTGGAACTATGTGACTGTAGTTTGTTTGTTTTCTCGTCTCATTCATCCTGCAATAG
Seq C2 exon
GAACATCATAACCCGCTCCGGATACACTCCATACGCACTTGAGGACTGTGGGGAGAAGCCATATCACTCCAGTTCTCTCACAACAATTCACATATACGTGGGAATCCACACTGTGAGCGGAGCGTATGGATATGAAGTGTATTCAAAACCTGTGGGTGCTCCAAGTTCATGTGGCACTGGTGAGCAAATTCAGAGTGGAGAGCAGCCCCATGGATATACTATAAACAAAACAGCCTTTATTTGCCCCAGCTCATTTTGCAGCAGCGAAGTAACTGACACTGAAGAAAACCCTTCTGAATGTAAACCAGGTGGTACAACTCTGAGTCCTTTCAATTACCCGCCGTTTTGCAGTGGAACTCATAATGGAGGAAAGCATGTTGACTGTACACAGTGTGTAAAGGCTTTCAGATGTCACAGTTCCCTTCAGAGACAGGAAAGAATGTGTGCTGAGGAAAAACCCTATGAATGTAAACAGTGTGGTAAGTCATTCGTTTACCCCTATTTACTTAAAATGCATGAAAGGCATCATACGGGAGAGAAGCCTTATAAGTGTAAGACATGTGGTAAGGCATTTCTTTGTTCCTCTTTCCTGCAAAGACATAAAAGAACTCATACAGGAGAAAAACCCTATAAATGTAAGCAGTGTGCTAAGCCCTTTAGACGCCTCAGTAATCTTCAGGTCCACGAGAGAACTCACAGTGGAGAGAAACCCTATGAGTGTAGAGAATGCGGTAAAGCTCTGAGAAGCCACAGTTCCCTTCAAAGACATAAAATAGTCCACGCTGGGAAGAAACCCTACGAATGTAAGCAGTGTGGTAAGTCCTTCATTTATCCCTACTTACTTCAAACCCACGAAAGATCCCATACTGGAGAGAAGCCCTACAAATGTCCCCTGTGCAGTAAAGCCTTTCGTTGTTCCTCTTTCCTGCAAAGACATGAAAGAACTCACACCGGGGGAAAACCCTACGAGTGTAAGCAGTGTGGTAAGGCTTTCAAAGGGCACAGCTCCCTTCGCTTGCATGCAAGGTCTCACGGCGGGGAGAAGCCATATAAATGTAATCTATGTAGTAAAGCTTTCCTGTGCCCCTCTTTCCTCCGAAGACACGAAAGAACTCACACTAGGGAACGGCCCTACGAATGCAGGAAGTGTAACAAAGCCTTCCGAGGTCAGAGTTCTCTTAAGTTACATGAACGATCTCATACCGGAGAGAAACCCTATAAATGTAAGATCTGTAGTAAAGCCTTTCTATGCTCCTCCTTCCTCCAAAGACATGAAAGGATTCACTGTGAAGAAAAGCCCTATGTGTGTAAGCAGTCTGGAAAAGACCTTAAAGATAGAAGTTCCTTTCAAAGACAGAAAGTGTCTCATGCTGGCGAAAAGCCTTATGAGTGTAAGCAGTGTGGTAAGTCCTTCGTTTACCCGTGTTTACTTCAAGTTCACGTCAGAACCCACACTGGTGAGAAACCCTATAGGTGTAAACAGTGTGACAAGGCTTTCAGAAGTCTCAGTTACCTTCGCATACATGAAGGAAGTCACACCGAGGAAAAGCCCTATGAATGTAAAGAGTGCGGCAAAACCCTCAGCTGCTCCAGCGCCCTGCAGTTACACACACGGACACACACGGGAGAGAAGCCCTATGTGTGTCAACAGTGTGGGAAAGCCTTCAGGGGATTCAGTTACCTCCGCGTCCACGAAAGGACCCACACTGAAGCCAAGCCCTACGAGTGCAAGCAGTGTGGGAAAATTCTCAGCTGCTCGAGTTCCCTTCAACTGCACGAAAGAACCCACACTGGGGAGAAACCTTACTCGTGTAACCAGTGCGGGAAAGCCTTCAGAGGTCTCAGCCGTCTCCGAGTCCACGAGATAATTCATACCGGCGAAAAACCCCACGAATGTAAACTCTGCGGGAAAGCTTTCCGGTATCGGAGTTTACTTCGCGTCCACGAAAGGACCCACACCGGTGAAAAACCCTATGCTTGTAAACAATGCAGCAAAGCCTTCAAAAGCCTCAGTAACCTGCGGATACACGAGAAGACTCACAGTGGGTTCTATGAGTGTAAGCAGTGTGGCAAAACCCTCAGTTCTTCCAACTCCCTCCAAGTACACGAAAGGGTCCACAGTGAAGAAAAATCGCACGCGTGTAAGCAGTGTGGCAAAACCTTCCGCCGGCTCAGTAATCTCCAGGTCCATGAAAAAACTCACGCCGAAGGGAAGCCCTACGAGTGCAAGCAATGCGCTAAGTCCTTCCTTTATCAGTATTTACTCGAAAAGCATGAAAAGTCTCACACTGCAGAAAAGCCCTATAAATGCATGATCTGCAGTAAAGCCTTTATCTGTGCCTCTTTCCTTCAACGGCACGAAAGGATTCATAGCGCAGAAAAACCCTATGAGTGTGTACAGTGTGGCAAAGCGTTCAAAGGCCTCAGTTCCCTTCAGCTACACGAAAGAGCCCACGCTAGAGAAAAGCATTATGACTGTACACAGTGTGGTAAAACCTTCAGATGTCACAGTCTCCTCCAGGCGCATGAAAGAACCCATACCGGTGAAAAACCCTTCGTGTGTGCAGAGTGTGGCAAAACCTTCAAAAGTGCGGGTTACCTTCGAATTCATGAAAAAACACACAGTGGTTTCTATGAGTGTAAGCAGTGTGGTAAGATTCTCAGCTGTTCAAGTTCTCTTCAGTTACACGAAAGAACCCACACCGGCGAAAAACCCTACGAATGTAAGCAATGTGGTAAGGCCTTCAGAAGTCAGAGTTCCCTTAGAAGACACGAAAGGATTCACGCCGGAGAGAAACCCTACGAATGCAAGCAGTGTGGGAAGTCCTTCATTTATCCATGCTACCTTCAAATGCACGAGAGATCTCACACCGGAGAGAAGCTCTATAAATGTAAAATATGTAGTAAAGCCTTTCTTTATCCCTGTTTCCTTCAAATGCACGAAAGAACTCACACCGGCGAAAAACCTTATAAATGCAAGCAATGTGCTAAAGCCTTCCGAAGTCACAGTTCCCTTCAAATGCATGAAAAAACGCATACAGGAGACAGACCCTATGAATGCAAGCAGTGCGGGAAAGTCTTGATAAGTCATAGTTCTCTTCAGAGGCATAAAATAGCTCATGCCGGGAGGAAACGTTACGAATGTAAACAGTGTGGTAAGTCCTTTGCGTATCCATATTTACTTCAAACTCATGAACGATCTCACACTGGAGAGAAGCCCTATGAGTGCAAGGACTGCAGGAAAGCCTTTACTTGTCACCGTTCCCTTCAGAGACACAGAAAAACACACACCTGAGGGGAAGGCTCTGTAAATGCAAACTAGATTAGACTACCTAGTTCTCTTCAAATGTGTGAAAGTACTGGGAAAAAGAGCTAATGAATGTAAAACAAATGCTGAAGTTTGTTGTTGTTGTTATTGCTGTAGTTTGCTATGGAAAGTTTAGAAGGATTCATTTGGGGGAGGGGAACCCTTGAATTGTGCTAAGACCCTCAGTTCCATTTGAAGACATGAAACTACCTGGTGTTAAAACTCAGAATGTAATATGGTATTTCATTTCTTAGATCTACTAAAAAATACATAAGCTAATGAAGGTAGTCACTTGGGAAGTAAAGCTTGTATTTTAACAATACTAAAAATCATGTGATAACTCTGATTAGGGGATCTTACAAATCTATGTGTATCCTGAGCTTGTTCCCGCCCGCAGAAACACACACAGGACACGCCAGATTCTTCCGTGGTTAACTTTACTTCATAACATATTGTGGTAGACAAAGAAGGCTCAGAAAGTATGTGGCTTAAATACCCTTAAGGCGTGACGTGTCTAAACTAGGACTGGTAGCTACACCCACGAACCTCATGCACCCTAGGGATAGGCTAAACGCCCCAGGGGTTGGGCTAGTGCCCTGGGGGATGGACCGTGCCCGGAAATGGGCTGGTGACTTTTGGCGGGTTTTTGCTTTTAGCACATGCGCATATAGCTTGTTCTTTGTTTAGGTGGTATAAGGCACTGCGGAGCCAGCACCATCTTAAGATGGTAAATGTTATTGCGGCTCTCTACACTATGTGTGTTGAAATGTTGAAGCAAATCATGCTAAAAGCTTTATAACATGAATAAAAAGCTATGCATTTTATGAATGTATGGTGGTTTCCAGTGATTTGCATTTGAAGATATTCCCAGCTGCCCCTGATAGATCAGGCCGGTACTCTTGGGTACTCTGGTTTGCTGCAGCTGATAGCAAGTTCAGGGCCAGCCCAGACAACTTAGTGAGACCAGTCTCAATAAAAAATTGGAAAGAAAACCAAAGCCACTCATTAATTGAGCTCTGGTCTCCCAGTGTAATTTCTAGTCCTAGCATAAGAGAAATGAGAAGGCGCCTAGGTGATGAATTTCCATTTCTTTTACAGGAAAACACTGAAGTGAAAGTTTCCTAAGTGTAGACATGAACTTTAACTGCAGAAATAGCTGATGCAGATTGCTAGACAATCTCTTAATTACCATAGATGTACCTGATAGTGTAGCCCACCATACACTTATGCTACATGGTATCAGTACTCCACTAGTCTGTGGAATGTCGCTTCATTGTATATTTTAGGCATGGTACCAACAAATATGTATCAAAAAAACATTTGGCATGAAAGTAAATGCTGTATCTATGAAGAGTACTTATTGTGAGTGGAGTTTTGAGGACTGGATTTTATTCAATCAGAGACTTAGGTGAATATAAACTCCTAGGACACATTAATCTACTGTAAAGTTTCAATACTATAGACTTAGTTTATTGTATATTGATGTTTTCCTAAATATTAAACTAACTTAAAGCTTTATACAGTGTGTATAATTTTAATACTTTTGATTTTTGTGAGAACAGTGCTTAAAATGTAGCCATTTTATGATTGTTTAAAACTATTTCTTTGTATGCATATTCTATATATATTTTTGCATTATAAATACGTTTTTAAAAACATTGTGAAAACCAGCTGTCACTTAGAACAGAGGCAGGAGGGTTGGTATAGCTTTCAGATCTATATGCACTGATTCTCATGTGCTCCCACATCACTCCCCTACGTTGTATCGTATGATTAACTGCACCTTCCTTTGTTCTGATCATATGACATTGGCATTGCATGTGATGTCATCCCATGCAATGCCTACTAACAGCTCCTTGAAGCACCTCAGCTCACACACAAGACTTGCTGAATGTTGCAAACGGAAGTACTTTTACTAAATAACCAGACTTTTCGGCTCTTATGGAAATAATGATTTCGTTGTGGGAAACAGACCGTCCTGTTTTTCCAGTGTCATTCATCAGCATGTAAGTACTAGATTAACTTATCTTTCCATTATACTGTAGAGTTTACCTTTAAAAGTTGCCTGAGTTACTGACTTGTATTTTATTGAAAAAGAATCATTCAATAATTATTGGGTTTCAATAATGAAAAATATTTTTAACAACTTATGAAATGGTCCTATCTGTATTTCTGCCTAGTATTTTATGTGATGTTCTTTATATTTTCCAAGTATAAAGCCAAAGTATCAACTCTGAAAAACATTGATTCCCTGTTCACTGCATTATCAAATACTCAGCCAAGATTTACTCTTTTATGTAAAAATAAGTATGCCTATTTTATTAATGTACAAGCTTAACTTTCATAATAAATGATAAAATTATCTAGTTACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068959:ENSMUST00000108015:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.036
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.3),PF054957=zf-CHY=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.2),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.2),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.0),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.1),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF0009621=zf-C2H2=WD(100=2.1),PF0009621=zf-C2H2=WD(100=2.1),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.2),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.3),PF134651=zf-H2C2_2=WD(100=2.2),PF127602=Zn_Tnp_IS1595=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=2.4),PF134651=zf-H2C2_2=WD(100=2.4)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000103650





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr19:12074422-12075311 
LOW PSI
HsaINT0188543
(ZNF844)
Human
(hg19)
chr19:12185237-12186126 
LOW PSI
HsaINT0188543
(ZNF844)
Rat
(rn6)
chr1:94860746-94861313 
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr3:10782748-10783268 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACCAGACCATTGAAGACCAGT

				
R: 
CACCTGGTTTACATTCAGAAGGGT

				
Band lengths: 
357-920

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"