HsaINT0188543 @ hg19
Intron Retention
Gene
ENSG00000223547 | ZNF844
Description
zinc finger protein 844 [Source:HGNC Symbol;Acc:25932]
Coordinates
chr19:12185176-12188626:+
Coord C1 exon
chr19:12185176-12185236
Coord A exon
chr19:12185237-12186126
Coord C2 exon
chr19:12186127-12188626
Length
890 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
GTGTTTCTCATTTTTCACAGAAG
3' ss Score
8.83
Exon sequences
Seq C1 exon
GAGAAAAATGGAAAGACCAGAACATTGAAGATCAGTACAAAAATCCCAGGAATAATCTAAG
Seq A exon
GTGATTTAAACTCACGAGACAAAGCAATGTCTCTCTAGAAAATCTCAGAATGCGAGAATATGTTAAGAAGAAGCAAATAAAGGAAATATGCCTAGCATTAAATTTATTTACTCTTAAAATATTCACTCTAAAAACCTACATTTAAATGTGATCTAGGCTGGGCACAGTGGCTCACACCTGTAATTTCAACTGTTTGGGAGTTGGAGGTGGGAGGATTGCTAGAGGCCTGGAGTTTGAGAAGAGCCTGAGCAAAATGGCGAGACTTCATCTCAAACAAAGAACTAGCTATACATTGTGGCATATACCTGTAGTCCTAGCTACATCGAAGGCTGAGGCAGGAAGATCACTTGAGTCCAGGAGTTCAAGGGTGCTGTGAACCATGATGATGCCACTGCACTCCAGCCTGGGCTATATGGTGACCCTGACTCAAGAAAATGATATAGAAGTTTAGTATTTGTAAAATAGTCTACATGGAAATATTATGAAGAATTCTCATATGGTGTTTTTCTTTTTTAAACATATGATTTTTAAAAATAATACGTATAGATAGGCCATCTTATAGCCATATGGTCCAGTCACCTTCCAACAATTTAGACAGGGTAGAAAGCCTACACTTTCCTGGATAATGTTGAAAGTGCAAGTTCAGTGGGGAGGGATAGCATTAGGAGATATACCTAATGCTAAATGACGAGTTAATGGGTGCAGCACACCAAATGGGACATGTATACATATGTAACAAACCTGCACGTTGTGCACATGTACCCTAAAACTTAAAGTATATTAATAATAAAATAAAATAAAATAAAATAAAATGCAAGTGTAATCCTTGTTAATAAACATCAAATCACTTATAAACAAACCTTCAATAATGTGTTTCTCATTTTTCACAG
Seq C2 exon
AAGTCTTCTGGGAGAGAGAGTTGATGAAAATACAGAAGAAAATCATTGTGGAGAAACTTCTAGCCAGATTCCAGATGACACACTGAACAAAAAAACTTCTCCTGGAGTAAAATCATGTGAAAGCAGTGTGTGTGGAGAAGTCTTCGTGGGTCATTCTTCCCTTAATAGGCACATTAGAGCTGACACTGCACACAAGCCGTCTGAGTATCAGGAATATGGACAGGAGCCATATAAGTGTCAACAACGTAAGAAAGCCTTCAGATGTCACCCCTCCTTTCAAATGCAAGAAAAGGCTCACACTGGAGAAAAACTCTATGATTGTAAAGAATGTGGAAAAACCTTCATATCCCATTCAAGCATTCAAAGACACATGATAATGCACAATGGAGATGGAACTTATAAATGTAAGTTTTGTGGGAAAGCCTGCCCTTGTCTCAGCATATATCTTATACATGAACGAGTTCACACTGGAGAGAAACCATATAAATGTAAACAATGTGGTAAAGCCTTTAGTTATTCAACTTCCCTTCAAATACATGAAAGAACTCACACTGGAGAGAAGCCTTATGAATGTAAGGAATGTGGGAAAGCATTCGGTAGTCCCAATTCCCTTTATGAACATAGAAGAACTCACACTGGAGAGAAGCCATATGAATGCAAACAATGTGGAAAAGCCTTCAGATGGTTCCATTCCTTTCAAATACATGAAAGAACTCACAGTGAGGAGAAGGCTTATGAATGTACCAAATGTGGGAAAGCATTCAAGTGTCCCAGTTATCTTTGTAGACATGAAGTGACCCACTCTGGGAAAAAGCCCTGTGAATGTAAACAATGTGGGAAAGCATTATCTTATCTTAACTTTCAAAGACACATGAAAATGCACACTAGAATGAGACCTTATAAATGTAAGACTGTGGAAAAGCCTTTGATTCTCCCAGTTCGTTTTGAAGACATGAAAGAACTCACACTGGAGAGAAACCTTATGAATGCAAGCACTGTGGTAAAGCCTTCAATCGTTCCAGTTCCTTTCACTATCATGAAAGGACTCACACTGGAGAGAAACCCTATGAATGTAAGCAGTGTAGTAAAGCCTTCATTTCTTCCACTTCCTTTCGATATCATGAAAGGACTCACACTGGAGAGAAACCGTATGAGTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCCTCACACCTTCAAATGCATGGAAGGACTCACACTCAAGAGAAACCCTATGAATGTAAGCAGTGTGGTAAAGCCTTCATTTTTTCCACTTCCTTTCGATATCATGAAAGGACTCACACTGGAGAGAAACCCTATGAGTGTAAGCAATGTGGGAAAGCCTTCACATCTGCCTCACACCTTCAAATGCATGAAAGGACTCACACTGGAAAGCAACTGTATGAATCTAAACAATGTGAAAAAACCTTTGGATCTGTCAGAAACCTTCAAATTCATGAAAAGACACACCCTGGAGAGAAACCCTATAAGGAATATGGAAAAGCATTCAACAATTTCTCTTCCTTTCAAATACATGCAACAATGCACAGAGGACAGAATGCCTATGAATGTAAAGAGTGTGACAAAGCATTCATATCTGCCAAGATCCTTCGAGTACATGCAAGAACACACCCTGGAGAGAAACCCTATGAATGTAAGGAATGCGGAAAAGCGTTCAATTATTTTTCTTCTTTGCGTATACACAAAAGGATGCACACTGGAGAGAAACCATATTAATGTAAGGATTGTGGGAAAGCATTCAGTTTGCCTGGTTCCTTTCGTAGACATAAAAGGGCTCACACTGGAGTGAAACCGTATGAATGCAAGGAATGTGGCAAAGCCTTCACTTCTTCTGGTTCCTTTCAGTGTCATAAAAGGATTCACACTGGAGAGAAACCCTATGAGTGTAAGCAGTGTGGTAAAGCCTTCATTTCTTCCACTGCCATTCGTAGACATGAAAGGACTCACACTGGAGAGAAACCCTATGAGTGTAAGCAATGTGGAAAAGCCTTTATTTCTTTCAGTTCCATTCAGTACCATGAAAGGACTCACACTGGAGAGAAACAGTATGAGTGTAAGCAGTGTGGTAAAGCCTTCATGTCTTCTACTGCATTTCAGTATCATGAAAAGACCCACACCAGAGAGAAACACTATGAATGTAAGCAGTGTGGGAAAGCCTTCATTTCTTCCGGTAGCCTTCGATATCATGAAAGGACTCACACTGGAGAGAAACCCTATGAATGTAAGCAGTGTGGTAAAGCCTTCAGATCTGCCACTCAACTTCAGATGCATAGAAAGATTCACACTGGCGAGAAACCCTATGAATGTAAGCAATGTGGGAAAGCCTACAGATCTGTCTCACAACTTCTGGTGCATGAAAGGACTCACACTGTAGAGCAACCCTATGAATATAAGCAATATGGGAAAGCCTTCAGATTTGCTAAGAACCTTCAAATACAGACAATGAATGTAAACAATTAAATGTTTATAGCAGCTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000223547-ZNF844:NM_001136501:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAGACCAGAACATTGAAGA
R:
CCAGTGTGAGCCTTTTCTTGC
Band lengths:
356-1246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)