MmuINT0180011 @ mm10
Intron Retention
Gene
ENSMUSG00000095325 | Zfp870
Description
zinc finger protein 870 [Source:MGI Symbol;Acc:MGI:3029586]
Coordinates
chr17:32879228-32885763:-
Coord C1 exon
chr17:32885703-32885763
Coord A exon
chr17:32884166-32885702
Coord C2 exon
chr17:32879228-32884165
Length
1537 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TCGCTTCTTTTGTTTTGCAGCAG
3' ss Score
9.39
Exon sequences
Seq C1 exon
GAAACAAGTCGGGCAAACAGAAGGTTATAAATGAGTATGGAAAACTATGGAGAAAACTAAG
Seq A exon
GTAATTTCTTTGCCACGAGATAGCCATATTCTTGAGAGCTGTTATGTTAGGACATCTCACAAAGAAGCAGTAGATGTACTTTATGTCAAGCATCAAACCAATTACTACCAAACTAGAATACAAACCAACATACAAACCAAACTAGAATGTGTTGATGTCATATGTGATCTGTTACCATAGCTTATATCTTAGCTTGGTTTTGTATTGCTGTACTCAAAGACCAGGAGCCAAGGCTGCTCTGGGTGGAAAGGTTTTTGTTTTATTTTTTTTTAATTTTTATTTATTTATTTTGGCTTTTCGCGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCTGGCAGGGTGAAAAGGGTTAATTTCACCTTTTAGTTAGCAGTCCATGATCCAGGGAAGTCAGGACATGAACTGAAGCAGACGTCATGGAGGCATGCTGTTTACTGTCCTGCCCTGTGTCCTGCCTTAGTTTTCTTATGCACCTCATGACCCCTTCCCCAGGAGTTGTACTGGTCACGTGGGCTGGATTATCATAAAGAAAATTCTCCACGGGCTTCCTTACTGGTCAGTTCAATGAGGACATTTTTTTCAACTAAAGTCCTCTAGGTTTTGTCCAGCTGACAAAATACTAAATAGCAAAATCAATTCTCTGTCATTAGGACTCATAAACACCTCAGTATTTGGCCATGGTCTGTCCTGTCCTTTTTGTTTGTCCACAAGATGTCATGTTAATATTAATATCACAATTTAGAACATTGGAAACAGTTTTAAGAAATTTCAACAGTTTAAAAGTCCAAGGGCTCCTAAAAACCGAGTGTCTCTTTCAAAAGCATTTTAATATTGCAACTGTGGACTTGCAATATTAAAAAAAAAAAGAATGTTCCATGCTTTCTTACTCCACTAGCGAAGAACCAGATTTATTTATTTATTTTATGTATATGAGTACACTCTCTTCAGACACACCAGAAGAGGGCATCAGAGCCCATTACAGATGGCTGTAAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACTTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCATCCCCAGATGAACACATTTTTAAAACTTAATGTTGTATTGATATATTCACCAGCCATGGGGGACAAATTGGGAATGATTTATTGTCAAAAGACAGAAGGTGATTTGACGGACACCATTGTGTATCCAAAATGTTCCAAAGATTGTGAATTGAGATAGATGTTGAAATGCTATGTGAATGTTTAGTGTTCTCAAGGAGAACCATACATGAATTGCACTGTTTCTAGTGGCACTGTCCTCAGGAGACTTGGAAAGCATGCAGTCTGAACACGTTACAAACTGTTTCCCAGCACGAGACCAGCATTCATTCCCGTGTTCAGTGGTTAGTAACCACTGTCTCAGGCATGCTCGCTTCTTTTGTTTTGCAG
Seq C2 exon
CAGCCACCTGGCGGGGAAATTCAGTGACTATAATGAAAATCATCAGTGTGCAGACATCTTCAACTGCAGTCCAGGGCACTCTGTGAGCCTGCAATCTTGTCCAGGACGTGCTACATTTGAAAAGAATCTCTGTGAAGAAGGTAGAATTGGCCATTCATCTCTGGGTGTGCCATTGAACCATCTGGTAGGACCTTATGAAGACCAAGAACATGGACAGCCATTGTATAAACATAAGGAGTTTGAGAGCAGCTCCAATTCTCTGTCCCTTCAGATGCATACAAACACTCACACCGGAGAGAAACCTTCCAAAAATAAGGGCTTTGAGGAAGACCTTCCTTGTGTCAGATCTGGCCAAACGTATAAACAAAATGACTATTCAAAGAAGTCTTATGTGCACAGGCCATGTGGGAAAGGCTTCACGCATCCCAGTCCTTTACAAAGGCATGAGAAGAGTCACAGCGTTAAGAAGCCCTATGTATGTGAACTGTGTGGCAAAGGCTTTGCTCGGTTTGGTAACCTTTTAAGGCATCAGAGAACTGACACAGGTGAGAAGATTTTTCTGCCTGGTCATTATGCAAGAACTCTTCCTCGTTCTGCTTGCCTTAGAAGAAGAACGAGTGTCCGCAATGGCGAGAAACCCTATGTATGTGAACAGTGTGGGAAGACGTTTCTTGATTCTACCTACTTTAGAATACACAGGAGGATTCACACTGGTGTGAAACCCTATGTCTGTAAGCAGTGTGGGAAGGCCTTCACTGCTTCTCGGTACCTCAGATCGCACGAACTAACGCACACTCGGGAAAAGTCTTATGTGTGCGAGCTCTGTGGGGGCGCCTTCACATTTTGGTATCAGTTTCAAAAGCACAAGGTAGCTCACAGTGGTGTGAATCCTTACGTTTGTAAGCAGTGTGGAAAGGGCTTTCCTTATTCCAGTTCCCTAAAAACACATGAGCGAATTCACACTGGTCAGAAGCCCTATGTGTGTAAGCACTGTGGGAAAACCTTTGGTAGTTCCGGGAACCTTAAAAGACATGGAAGTACTCACACTGGTGAGAGACTCTACATTTGCAAGCAGTGTGGGAAGTCATTCAACAATCACAGTTCCTTTCAGTTCCACAATCGAATGCATACTGGAGCGAATCCCTACAAGTGTAAGCAGTGTGGGAAGGATCTAGCTTCTTCCTCCTCCCTTCAGAGCCACGAAAGGAATCACTCTGGAGAGAAGCCCTACGCGTGTTTGCAATGCGGGAAAGCTTTCAGTTCAGACAGCTCTCTTCGGAAACATAAAATAATGCATAGTGAAGAAAAACCCTACGTATGTAAGCACTGCGGGAAATCTTTTCGTCGCTTTTTTGAGGTTCGGGTACATGAGCGAATCCACAGTAGTGAGAGACCCTATGAATGTGAGACGTGCGGGAGAGGCTTTTTGAGTTCAACTCATTTACGAAGGCATGTACCAATTCATAGTAGAGCAGAAAAGGATGCTAGTAAATAACATGAGAAACTCTGTGGTAGTTCTCACTAAGTCAAACTGCATGAAGTAGGTTATTGCTAGCAATGTGGGGAAGTGTCAGACAAATTTGAGAAGACCATATACTTTTGAATTGATGTAGGTATTACTACTAGAAATTCTCTTCTAATATATGGGAGCAGACACTGGAGAAATGCTGCAAGCCACGTGATGAAATCCTCAGCGTTCTTTTCATTGTGGAGAAGATGTGAAATAGCTCACACTGGAGAAAAACCTTATGCAGGCCATGTGGAAAGCCCTTAGTTCTCAGGGGGCCCTCGAGACATGGTAGTTGTCATTCAGAGAGAAATCCTTCATATATAATGTGGTGATTTGAATAAGGATGCTCCAAATATGCTTATATATTTGAATGTTTATTAACCAGGGAGTGGAATTGTTTTGAAAGGCTTATAAGAATTAAAAGGCATGGCCTTTTTTAGAGTAGATGTGAACTTTTCAGAGGTGTGAGGTGTAAGACTTGGCGGTGGACTTGGAGGTTTCAAAAGCCTGTGCAAGATCCAGTTTCTCGGTCTTTGTGTCTGTTTTTGTGGATCAGGATGTAGCTCTCAGCGACTGCGTAAGTTCCCAGACATGATGCTAATGGTCTGCATCTCTGAAACTGTAAGCAAGCCCCCAATTAAATGCCTTCTCTTGTAAGTGTTCCTTTGTCATGGTGTCTCTTCACAGCAATAGAACAGTGTCTAAGACATAGAATCTTACACAACTTTCAGTCATCTTAAGGAGACATGAAATAACTCACTGTGGGGTAGCCTAACCTACAGGATTTGTAAAGTCTCCATTATTACTTTGTTAGTACTTCAAAAGGATGCATCGAGAAAACCCCTAGCATTGGAAAGCATGTGGGGAGATTTCTGGATTCAACTCAAAAATTAAGAAATAGCAAAGTTTGAGAAACAAGTTTGATTAAAAGAGATACTTGATTTTGGTCAGACAGTCTCATCCACCAAGTCTGTGTGCCCCCTCTGGTGAAGTTGTCCCCAGGTGTGGTGGCTCAGGCATGTGTCCTACTTGGGAAGCTTGTGAGAAGGATTCCAAGTTTCAGAGCTGTCTGGGTGTATTGAGGTCCTGGTATTCCCAGGGAAACTGGGCTCCCCTTTGGGGGATTGTATCCTGATAATAATAAGTGAGCCCAGAGGAAATCTCAAGGACTGTTTTAGAAAGTTTGAGTCAAAAACCACATACCAGGCAAGCTATAGGCAAACTATAGGTCTTGAAGGAAGTGTGTTCTAGTGTCTCCTCCTACTCTTTTCCCTTCCTCCTAGCCCCGTCTCCCTCTTTAACTTCGTAAATTTTTATTTCACAAATGTGAGTGTTTTGCCTGCATCTGTATCTGTTCTGTGTATGTGTACCTGGTGCCCAATGAGGCCAGAAGACAGCATTGAACCCCCAGGAAGTGGAGTTACAGATGGTTTGAACCTCCATGTTGGGATGTTGGGAGTTAACGCCAGGGACTCTGAAACGCCAGTGCTCCTGACCACTAAGCCACGTCTCCAGGCAAACAACTAGCTAACAACTGCCAGATAACTTGGTTTGTGCTATGTAGCCCAGGCAGGATGTTCTCACACTCACTGCAATGCTCATGCCTTATTCTGTCATCACCGTGTGAAGTAGTATTTTGACAGGAAGTATATCTGTTTTCATTTTCAAAAATTACATAGCTAAAAATACTCAATTGCCCATTTACTGCATGTTAAGCAAGCACTTTCCCTTATATACGTGTCTAGTCTTCGTGGTTAGATAGGTGAATATAGACACCGTTTGCTCCATCTTACTACATATTATTAGTTTCTGACAGTGCCCCTGCCTAAGAGCAGCTTCAGTATATTTGACCACAACTAGGCGTTCTAACCATAAAGAGACACAGATACCAAGATGCCGCTGCAGGTTGACTTGGTGAGCTCTTTGACTATTGGGTAGTCTGGGGTGACCTCCTTCCTGGAAAGGTGGAAGCTTTTTGAAGCCATCCACGCCTACAATTTAGTCTGTGGCAGTTACATTAGGTGCATGATTTAGTGGGTGAGTATGGCTGTGATAAACACCACAAGCCAAACGAGTGGGGAGACAGGGTTCATCTGGCTTTATACTTCAAAATCACAGTGCATCATCAAAGGGAGTCGGGACAGGAACTCAGACAGGGCAGGAAGCTGGAGGCTGATGCAGAGGCTACGGAGGGGAGCTGCTTACTACTGCTTGCTCACACTGCCTTGTTCAACCTGCTTTCTTACAGAATCCAGGACCACCAGCCCAGGGATAGCACCATCTATAATGGACTGGGCCCTCCCCCCATCAGTCACAAATCGAGAAAATGCTCTACAGCCTTGCGTTCAGCCCGGTTTTGAAGCATTTTCTCAATGTTGGTTCCCTCTTCTCAAATGACTCTAGCCTGTGTCAAGTTGTCACAAGTAACCAGTACAGTGCAGGAGCCCACGAAAGGAAAACTAGACAGCAGGGCCTGTGTATGACTCGCCAACCTGTCAAGACCAGCTTTGTTTCCCAAATGTGCTCAGGTTGGCAATCTCATACCCAGAATCAAGCCTTCCTGTTTATTTTTTCAGTGTCCTTCACCTCACCATAGTCAACATTTTAAAACATTTTTATTTTTATATATTTATGTATAGGTATGACACATTTTCAATTTTTTTATACTTATATGTGTGAGTATGGACATGTGTGACGGTAACCCGAGTCCAGAAAGCCATTAGATGCCTTATGAGTATTGCTTCTCAACCTGTGGGTTGGTGGCCTTTTAACAACCCTCCTTCTCAACAAAAAAATGTACATTATGATTCATAACAGCAGCATCACAGTTATGAACTAGCAACAAAAACAATGTAATGGTTTGAGTTGCCAAATGAACTATATTAAAGGGTCACCGCATTGGGAAGGTTGAAAACCACTTACTACCTTAGAGCAAGCTGGTAGTTGTGAGCTGCCAGGGGTGCTGGGAACTGAAGTCTGGTCCTGCCCAAGAGCAGAAGGTGCTCTTAATCACCAAGCTACGTTCCCAGCTCCTCAGCCCAATATCTTTTTTTTTAAATATTTTTAAAGATTCATTTATTTATTATATGTAAGTACACTGTAGCTGTCCTCATACAATCCAGAAGAGGGAGTCAGATCTTGTTATGGGTGGTTGTGAGCTACCATGTGGTTGCTGGGATTTAAACCCCGGACCTTCAGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCACCTCACCAGCCCTCAGCCCAATATCTTAACATTCGCATTAACCCCAGCACTTGTTTTCACCACAACAAAGAGAAACATCTGTACAGCAGCATGGATGGCAAACGTGGTTCTATTGGAAGCCTCTGGGAGCACTGCTCTCACAATTCAGACCCACACACAGTCCTGCACGTGTAAACGCAATTAAAAAGAAATACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000095325:ENSMUST00000178401:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.157
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.6),PF0128613=XPA_N=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF054957=zf-CHY=WD(100=14.6),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCGGGCAAACAGAAGGT
R:
CTCTCCGGTGTGAGTGTTTGT
Band lengths:
355-1892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types