MmuINT0180011 @ mm9
Intron Retention
Gene
ENSMUSG00000057254 | Zfp870
Description
zinc finger protein 870 [Source:MGI Symbol;Acc:MGI:3029586]
Coordinates
chr17:33016166-33022708:-
Coord C1 exon
chr17:33022648-33022708
Coord A exon
chr17:33021111-33022647
Coord C2 exon
chr17:33016166-33021110
Length
1537 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TCGCTTCTTTTGTTTTGCAGCAG
3' ss Score
9.39
Exon sequences
Seq C1 exon
GAAACAAGTCGGGCAAACAGAAGGTTATAAATGAGTATGGAAAACTATGGAGAAAACTAAG
Seq A exon
GTAATTTCTTTGCCACGAGATAGCCATATTCTTGAGAGCTGTTATGTTAGGACATCTCACAAAGAAGCAGTAGATGTACTTTATGTCAAGCATCAAACCAATTACTACCAAACTAGAATACAAACCAACATACAAACCAAACTAGAATGTGTTGATGTCATATGTGATCTGTTACCATAGCTTATATCTTAGCTTGGTTTTGTATTGCTGTACTCAAAGACCAGGAGCCAAGGCTGCTCTGGGTGGAAAGGTTTTTGTTTTATTTTTTTTTAATTTTTATTTATTTATTTTGGCTTTTCGCGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCTGGCAGGGTGAAAAGGGTTAATTTCACCTTTTAGTTAGCAGTCCATGATCCAGGGAAGTCAGGACATGAACTGAAGCAGACGTCATGGAGGCATGCTGTTTACTGTCCTGCCCTGTGTCCTGCCTTAGTTTTCTTATGCACCTCATGACCCCTTCCCCAGGAGTTGTACTGGTCACGTGGGCTGGATTATCATAAAGAAAATTCTCCACGGGCTTCCTTACTGGTCAGTTCAATGAGGACATTTTTTTCAACTAAAGTCCTCTAGGTTTTGTCCAGCTGACAAAATACTAAATAGCAAAATCAATTCTCTGTCATTAGGACTCATAAACACCTCAGTATTTGGCCATGGTCTGTCCTGTCCTTTTTGTTTGTCCACAAGATGTCATGTTAATATTAATATCACAATTTAGAACATTGGAAACAGTTTTAAGAAATTTCAACAGTTTAAAAGTCCAAGGGCTCCTAAAAACCGAGTGTCTCTTTCAAAAGCATTTTAATATTGCAACTGTGGACTTGCAATATTAAAAAAAAAAAGAATGTTCCATGCTTTCTTACTCCACTAGCGAAGAACCAGATTTATTTATTTATTTTATGTATATGAGTACACTCTCTTCAGACACACCAGAAGAGGGCATCAGAGCCCATTACAGATGGCTGTAAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACTTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCATCCCCAGATGAACACATTTTTAAAACTTAATGTTGTATTGATATATTCACCAGCCATGGGGGACAAATTGGGAATGATTTATTGTCAAAAGACAGAAGGTGATTTGACGGACACCATTGTGTATCCAAAATGTTCCAAAGATTGTGAATTGAGATAGATGTTGAAATGCTATGTGAATGTTTAGTGTTCTCAAGGAGAACCATACATGAATTGCACTGTTTCTAGTGGCACTGTCCTCAGGAGACTTGGAAAGCATGCAGTCTGAACACGTTACAAACTGTTTCCCAGCACGAGACCAGCATTCATTCCCGTGTTCAGTGGTTAGTAACCACTGTCTCAGGCATGCTCGCTTCTTTTGTTTTGCAG
Seq C2 exon
CAGCCACCTGGCGGGGAAATTCAGTGACTATAATGAAAATCATCAGTGTGCAGACATCTTCAACTGCAGTCCAGGGCACTCTGTGAGCCTGCAATCTTGTCCAGGACGTGCTACATTTGAAAAGAATCTCTGTGAAGAAGGTAGAATTGGCCATTCATCTCTGGGTGTGCCATTGAACCATCTGGTAGGACCTTATGAAGACCAAGAACATGGACAGCCATTGTATAAACATAAGGAGTTTGAGAGCAGCTCCAATTCTCTGTCCCTTCAGATGCATACAAACACTCACACCGGAGAGAAACCTTCCAAAAATAAGGGCTTTGAGGAAGACCTTCCTTGTGTCAGATCTGGCCAAACGTATAAACAAAATGACTATTCAAAGAAGTCTTATGTGCACAGGCCATGTGGGAAAGGCTTCACGCATCCCAGTCCTTTACAAAGGCATGAGAAGAGTCACAGCGTTAAGAAGCCCTATGTATGTGAACTGTGTGGCAAAGGCTTTGCTCGGTTTGGTAACCTTTTAAGGCATCAGAGAACTGACACAGGTGAGAAGATTTTTCTGCCTGGTCATTATGCAAGAACTCTTCCTCGTTCTGCTTGCCTTAGAAGAAGAACGAGTGTCCGCAATGGCGAGAAACCCTATGTATGTGAACAGTGTGGGAAGACGTTTCTTGATTCTACCTACTTTAGAATACACAGGAGGATTCACACTGGTGTGAAACCCTATGTCTGTAAGCAGTGTGGGAAGGCCTTCACTGCTTCTCGGTACCTCAGATCGCACGAACTAACGCACACTCGGGAAAAGTCTTATGTGTGCGAGCTCTGTGGGGGCGCCTTCACATTTTGGTATCAGTTTCAAAAGCACAAGGTAGCTCACAGTGGTGTGAATCCTTACGTTTGTAAGCAGTGTGGAAAGGGCTTTCCTTATTCCAGTTCCCTAAAAACACATGAGCGAATTCACACTGGTCAGAAGCCCTATGTGTGTAAGCACTGTGGGAAAACCTTTGGTAGTTCCGGGAACCTTAAAAGACATGGAAGTACTCACACTGGTGAGAGACTCTACATTTGCAAGCAGTGTGGGAAGTCATTCAACAATCACAGTTCCTTTCAGTTCCACAATCGAATGCATACTGGAGCGAATCCCTACAAGTGTAAGCAGTGTGGGAAGGATCTAGCTTCTTCCTCCTCCCTTCAGAGCCACGAAAGGAATCACTCTGGAGAGAAGCCCTACGCGTGTTTGCAATGCGGGAAAGCTTTCAGTTCAGACAGCTCTCTTCGGAAACATAAAATAATGCATAGTGAAGAAAAACCCTACGTATGTAAGCACTGCGGGAAATCTTTTCGTCGCTTTTTTGAGGTTCGGGTACATGAGCGAATCCACAGTAGTGAGAGACCCTATGAATGTGAGACGTGCGGGAGAGGCTTTTTGAGTTCAACTCATTTACGAAGGCATGTACCAATTCATAGTAGAGCAGAAAAGGATGCTAGTAAATAACATGAGAAACTCTGTGGTAGTTCTCACTAAGTCAAACTGCATGAAGTAGGTTATTGCTAGCAATGTGGGGAAGTGTCAGACAAATTTGAGAAGACCATATACTTTTGAATTGATGTAGGTATTACTACTAGAAATTCTCTTCTAATATATGGGAGCAGACACTGGAGAAATGCTGCAAGCCACGTGATGAAATCCTCAGCGTTCTTTTCATTGTGGAGAAGATGTGAAATAGCTCACACTGGAGAAAAACCTTATGCAGGCCATGTGGAAAGCCCTTAGTTCTCAGGGGGCCCTCGAGACATGGTAGTTGTCATTCAGAGAGAAATCCTTCATATATAATGTGGTGATTTGAATAAGGATGCTCCAAATATGCTTATATATTTGAATGTTTATTAACCAGGGAGTGGAATTGTTTTGAAAGGCTTATAAGAATTAAAAGGCATGGCCTTTTTTAGAGTAGATGTGAACTTTTCAGAGGTGTGAGGTGTAAGACTTGGCGGTGGACTTGGAGGTTTCAAAAGCCTGTGCAAGATCCAGTTTCTCGGTCTTTGTGTCTGTTTTTGTGGATCAGGATGTAGCTCTCAGCGACTGCGTAAGTTCCCAGACATGATGCTAATGGTCTGCATCTCTGAAACTGTAAGCAAGCCCCCAATTAAATGCCTTCTCTTGTAAGTGTTCCTTTGTCATGGTGTCTCTTCACAGCAATAGAACAGTGTCTAAGACATAGAATCTTACACAACTTTCAGTCATCTTAAGGAGACATGAAATAACTCACTGTGGGGTAGCCTAACCTACAGGATTTGTAAAGTCTCCATTATTACTTTGTTAGTACTTCAAAAGGATGCATCGAGAAAACCCCTAGCATTGGAAAGCATGTGGGGAGATTTCTGGATTCAACTCAAAAATTAAGAAATAGCAAAGTTTGAGAAACAAGTTTGATTAAAAGAGATACTTGATTTTGGTCAGACAGTCTCATCCACCAAGTCTGTGTGCCCCCTCTGGTGAAGTTGTCCCCAGGTGTGGTGGCTCAGGCATGTGTCCTACTTGGGAAGCTTGTGAGAAGGATTCCAAGTTTCAGAGCTGTCTGGGTGTATTGAGGTCCTGGTATTCCCAGGGAAACTGGGCTCCCCTTTGGGGGATTGTATCCTGATAATAATAAGTGAGCCCAGAGGAAATCTCAAGGACTGTTTTAGAAAGTTTGAGTCAAAAACCACATACCAGGCAAGCTATAGGCAAACTATAGGTCTTGAAGGAAGTGTGTTCTAGTGTCTCCTCCTACTCTTTTCCCTTCCTCCTAGCCCCGTCTCCCTCTTTAACTTCGTAAATTTTTATTTCACAAATGTGAGTGTTTTGCCTGCATCTGTATCTGTTCTGTGTATGTGTACCTGGTGCCCAATGAGGCCAGAAGACAGCATTGAACCCCCAGGAAGTGGAGTTACAGATGGTTTGAACCTCCATGTTGGGATGTTGGGAGTTAACGCCAGGGACTCTGAAACGCCAGTGCTCCTGACCACTAAGCCACGTCTCCAGGCAAACAACTAGCTAACAACTGCCAGATAACTTGGTTTGTGCTATGTAGCCCAGGCAGGATGTTCTCACACTCACTGCAATGCTCATGCCTTATTCTGTCATCACCGTGTGAAGTAGTATTTTGACAGGAAGTATATCTGTTTTCATTTTCAAAAATTACATAGCTAAAAATACTCAATTGCCCATTTACTGCATGTTAAGCAAGCACTTTCCCTTATATACGTGTCTAGTCTTCGTGGTTAGATAGGTGAATATAGACACCGTTTGCTCCATCTTACTACATATTATTAGTTTCTGACAGTGCCCCTGCCTAAGAGCAGCTTCAGTATATTTGACCACAACTAGGCGTTCTAACCATAAAGAGACACAGATACCAAGATGCCGCTGCAGGTTGACTTGGTGAGCTCTTTGACTATTGGGTAGTCTGGGGTGACCTCCTTCCTGGAAAGGTGGAAGCTTTTTGAAGCCATCCACGCCTACAATTTAGTCTGTGGCAGTTACATTAGGTGCATGATTTAGTGGGTGAGTATGGCTGTGATAAACACCACAAGCCAAACGAGTGGGGAGACAGGGTTCATCTGGCTTTATACTTCAAAATCACAGTGCATCATCAAAGGGAGTCGGGACAGGAACTCAGACAGGGCAGGAAGCTGGAGGCTGATGCAGAGGCTACGGAGGGGAGCTGCTTACTACTGCTTGCTCACACTGCCTTGTTCAACCTGCTTTCTTACAGAATCCAGGACCACCAGCCCAGGGATAGCACCATCTATAATGGACTGGGCCCTCCCCCCATCAGTCACAAATCGAGAAAATGCTCTACAGCCTTGCGTTCAGCCCGGTTTTGAAGCATTTTCTCAATGTTGGTTCCCTCTTCTCAAATGACTCTAGCCTGTGTCAAGTTGTCACAAGTAACCAGTACAGTGCAGGAGCCCACGAAAGGAAAACTAGACAGCAGGGCCTGTGTATGACTCGCCAACCTGTCAAGACCAGCTTTGTTTCCCAAATGTGCTCAGGTTGGCAATCTCATACCCAGAATCAAGCCTTCCTGTTTATTTTTTCAGTGTCCTTCACCTCACCATAGTCAACATTTTAAAACATTTTTATTTTTATATATTTATGTATAGGTATGACACATTTTCAATTTTTTTATACTTATATGTGTGAGTATGGACATGTGTGACGGTAACCCGAGTCCAGAAAGCCATTAGATGCCTTATGAGTATTGCTTCTCAACCTGTGGGTTGGTGGCCTTTTAACAACCCTCCTTCTCAACAAAAAAATGTACATTATGATTCATAACAGCAGCATCACAGTTATGAACTAGCAACAAAAACAATGTAATGGTTTGAGTTGCCAAATGAACTATATTAAAGGGTCACCGCATTGGGAAGGTTGAAAACCACTTACTACCTTAGAGCAAGCTGGTAGTTGTGAGCTGCCAGGGGTGCTGGGAACTGAAGTCTGGTCCTGCCCAAGAGCAGAAGGTGCTCTTAATCACCAAGCTACGTTCCCAGCTCCTCAGCCCAATATCTTTTTTTTTAAATATTTTTAAAGATTCATTTATTTATTATATGTAAGTACACTGTAGCTGTCCTCATACAATCCAGAAGAGGGAGTCAGATCTTGTTATGGGTGGTTGTGAGCTACCATGTGGTTGCTGGGATTTAAACCCCGGACCTTCAGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCACCTCACCAGCCCTCAGCCCAATATCTTAACATTCGCATTAACCCCAGCACTTGTTTTCACCACAACAAAGAGAAACATCTGTACAGCAGCATGGATGGCAAACGTGGTTCTATTGGAAGCCTCTGGGAGCACTGCTCTCACAATTCAGACCCACACACAGTCCTGCACGTGTAAACGCAATTAAAAAGAAATACTTCAGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057254-Zfp870:NM_207245:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.157
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.6),PF0128613=XPA_N=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF054957=zf-CHY=WD(100=14.6),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCGGGCAAACAGAAGGT
R:
CTCTCCGGTGTGAGTGTTTGT
Band lengths:
355-1892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: