RnoINT0168721 @ rn6
Intron Retention
Gene
ENSRNOG00000030416 | Zfp870
Description
zinc finger protein 870 [Source:RGD Symbol;Acc:1597136]
Coordinates
chr7:15159422-15163550:-
Coord C1 exon
chr7:15163490-15163550
Coord A exon
chr7:15160902-15163489
Coord C2 exon
chr7:15159422-15160901
Length
2588 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
ACTCTTCATTTGTTTTGCAGCAG
3' ss Score
8.81
Exon sequences
Seq C1 exon
GAAACAAGTTGAGCAAACAGAAGGTTGTGAGTGAGTATGAGAAACTATGGAGAAAACTGAG
Seq A exon
GTAATTTCTTTCCTAAATCATTGTTTTTAAAAAGATTCTTTTATTTTATGTATATGAGTACACTGTAGCTGTCTTCAGACACACCAGGAGAGGGCATCTGATCCCATTACAGATGGTTGTGAGAGTCACCATGTGTTTGCTGGGAATTAAACTCAGGAAGAGCAGTCGGTGCTTAAAACCACTGCGCCATCTCTCCAGTCCCTCCCAAACCAATTTTAACTCCAGAAAATTTCTCTCAGAATTGTGTTTTACACATCAGCATTAGGAGATGCCAAATACTACAATATGGAGAGCAGCCAAAATATGCTGATGTCATGTGGATGTATTACCATGGCTCATGTAATCCATACCTTAGGCCATACAGAATATCTCAGTTTGGATTTATATCGCTATACTCAAGACCAACGGGCAAGGCAGCTGGGGAGGAGAGGGTTAACTTCACCCTGTAATCAGCAATCCATGATCAAGGGAAGTCAGGTCATGAAGTCCAACAGGAACCTGTGGGCAGAGGTCATGGAGGAACACGGCTTACTCAGTTTGTTTTCTTATGAACCTCAGGACCCCTTCCCCAGGGATCGTGCTCGTAACAGTGGGCTGGATCATCAAGTAAGAAAATGTTCCACAGGCTTCCTTACAGGCCAACTCCGTGAGGACATTTTTCCAACTAAAGTCCCCTAGATTTTGTCCAGATGACAAGATACTATCAAAATCGATTCTCTGATGTCCCTTTTTGCTTGTCCACACTATGTCATGTTAATATTAATATCACAGTTTAAAGCATTAGAAACAGTTTTAAGAAATTTCAACAGTTGAAAAGTCCAAGGGCTCCTTAAAAACCAAGGGTCTCTTTCAAAAGCCAAAAAAGTCTCTGAACTGTGGGGCCCTTGTAAAAAAAAAATGAATTTTACATGCTTTCTTACTCCAATAGAGAAGAACAAGGGCATAGTCACAATCAAAGCCAATGAAACCAACTTTCAGCAGTATAAACATTAGGCTCCCACTCCTGGAAATGAAACTCTATCTCCTGGGCTCACACGGTCTCGGACTGCTCCACTTTCTCACAGGCACTACCAGCAACACAGATTGTCTCCAGGGTCAGGCCAGTGCCTCATCATTTGATACCCTGGGCTGTCATCCTACGCTACTCGTGTCTCCATTATGGTTTTCACAGTACCTGAGGCTCAACCTTCCCTTACATAGACAGAGGGAAGGGATTATTTGTCTAACATGTCCTGGTCACGGTCCATCAGTAAGAGAAGCCAAAACAGGAACTCAGTACAGTCAGGGCCCAGAGACAGGAACTGAGACTGAGCCATGGAGGAAAGTGCTTACTGACTTGCTCTTCAGGGCTTCCTCAGCCTGCTTTCTTGTACAATCAGAACCACCTGGTGCTTCGGGGGTGACACCACCCACTGTTGGCTGGTTCCTCCCACACTGATGATTGGTAACAAAAATGCCCCCACAGATTTGCCTCAAGATGATCTAATGCAAACATTTTCTAGTCTAAGATTCCTCTTTTCAGATGATTCTACATTGTGTCAAGTTGACAGAAAACTATACCAGTTACACCTCATCATTGCAAAATGGTGTACAGGGGACTCAAAAAAATTGCCTAGCCAGTGTGTTAGGGTTTCTATTCCTGCACAAACATGACCAAGAAGCAAGTTTGGGGAGGAAAGAGTTTATTCAGCTTACACTTCCACACTGCTGTTCATCACCAAAGGAAGTCAGGACAGGAACTCACACAGGGCAGGAACCCGGAGGCAGGAGTGGATGCAGAAGCCATGGATGGATGCTGCTTACTGGCTTGCTTCCTCTGGGTTGCTCAGTTTGCTCTCTTATAGAACCTAGGATTATCAGCCCCGGGACGGCACCACCCACAATGGGTCCTCCCCCGCTGACCACTAATTGAGAAAATGCCTTACAGCTAGGTCTCGTGGAGGCATTTCCTCAAGGGAGGTTCCTTTCTCTGTGATAACTCCATCTTGTGGCAAAACCAGCCAGTAATAGGGCTGGCCATGAAATCAGAATTGTCTGAGTTCGGTTCCCAGAACCCACATAAAATGGTGCATGTATGTAATCCCAGCACTTCTCAGAGAGACCCTGCTTCACCGACATAGAAGCCAAGAGAACTCCTGAAAGTTGTCCTGAGCTTCTCCCACACACCCATAGACACAGGGAATTAACACATGTTTTAAAACTTAGTGTTGTATTGATTTATCTACCAGTCATGGGGACAAGTTGGGAATGACTTATTATTAAAAAAAAATGTCAGTTTTTTATTTCATGACCTTGCAAGTATTTAAAAACTAGGTGATTTTTGATTGATACCATTGCAACATCCAAAATGTTCTAAAGATTGTGAATTGAGATATATGTTGAAATGCTGTGTGAATGTTTAATGTTCTCAAGGACACATACTTCACCGTACATGAATCCCACTGTTTCTGCTGTGACTGCCCTCAAGTAGACTTGGAAAGCATGCAGTCTGAACTGTTACAAACTGTTTCCCAGCATGAAGCCAGCATTTCTCTGTTTAGTCATTGGTGAGCACCGTCTTAGTCATGAACTCTTCATTTGTTTTGCAG
Seq C2 exon
CAGCCAACTGGTGGAGAAGTTCTGTGACTATCATGAAAGTCGTCAGTGTGCAGAAATCTTCAGCTTCAATCCAGGGCACTCCTGTCCAGGACTTGCTACCTTTGTAAAGAATGCCTGTGAAGAGGGTAGAATTGGCCATTCATCTCTGGGTGTGCCACTGAACCATCAGGTAGGACCTTATGAAGACCAGGAATATGGACAGGCACTGTATGAACGTAAGGAGTTGGGGAGCAGCTCCAGTTCTCTGTCCCTTCAGATGCACAAAAGCACTCCCACCGGAGAAAAACCTTCCAACAATAAAAACTTTGAAGAAGACCTTCCTTGTGTCAAATCCAGCCAAATGTATGAACAAAATGGTTGCGCAAAGAAGTCTTATATGCACAAGGCATGTGGGAAAGGTTTCGCGCATCCCAGTCCTTTACAAAGGCATGAGAAGGTTCACAGCGTTAAGAAGCCCTATGTGTGTGAACTGTGTGGGAAAGGCTTTGCTCGGTTGGGTAACCTTTTAAGGCATCAGAGAACTGGCACAGGTGAGAATCCTTTTCTGCCTGATCCTTACACAAGGTCTCTTCCCCGTTCTGCTTGCCTTAGAAGAAGAATGAGTATTCACGCTGGTGAGAAGCCCTATGTGTGCGAACAATGCGGGAAAACTTTTCTTGATTCCACTTACTTTCGAATACACAGAAGGATTCACACCGGTGTGAAACCCTATGTGTGTAAGCAGTGTGGGAAGGCCTTCACTGCTTCCCGCTACCTCAAATCACACGAGCTGACTCACACCCGGGAGAAGTCTTACGTGTGTGAGCAGTGTGGGAGCGCCTTCACATTTTGGTATCAGTTTCAGAAGCACAAAGTGACTCACAGCGGTGTGAATCCTTACGTTTGTAAGCAGTGCGGGAAAGGCTTTACTTACTCCAGTTCCCTAAAAACGCATGAAAGAACCCACACTGGTCAGAAGCCCTACGTGTGTAAGCACTGTGGGAAAACCTTCGGTAGTTCCGGCAACCTTAAAAGACACGGAAGCACTCACACTGGCGAGAGACTGTATGTGTGCAAGCAGTGTGGGAAGTCGTTCAATAATCACAGCTCCTTTCAGTTCCACAATCGGATGCACACCGGAGAGAACCCCTACAAGTGTAAGCAGTGTGGGAAGGATTTAGCTTCTTCCTCCTCCCTGCAGAACCACGAAAGGAATCACTCTGGAGAGAAGCCCTATGCGTGTTTGCAGTGCGGGAAAGCCTTCAGTTCCGACAGCTCCCTTCGGAAGCATAAAATAATGCACAGTGAAGAAAAACCCTACGTATGCAAGCACTGTGGGAAGTCTTTCCGCCGCTTTTTTGAGGTCCGGGTACACGAACGAATCCACAGTAGCGAGAGACCCTATGAGTGCGAGACGTGCGGGAGAGGCTTTTTGAGTTCAACTCATCTGCGAAGGCATGTACCGATTCACAGTAGACCAAATAAGGGAATTAGTAAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030416:ENSRNOT00000042638:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF0128613=XPA_N=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF054957=zf-CHY=WD(100=14.6),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]