MmuINT1035745 @ mm10
Intron Retention
Gene
ENSMUSG00000095253 | Zfp799
Description
zinc finger protein 799 [Source:MGI Symbol;Acc:MGI:2443934]
Coordinates
chr17:32815449-32821838:-
Coord C1 exon
chr17:32821778-32821838
Coord A exon
chr17:32821100-32821777
Coord C2 exon
chr17:32815449-32821099
Length
678 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
TTTTAAAATTTTTTTCGCAGTAG
3' ss Score
6.15
Exon sequences
Seq C1 exon
GAAACAAATGGGAACACCAAAATATTGAAAATGAGTATGAAACTCTCTGGAGAAAACTAAG
Seq A exon
GTAATCTGTGCCTAGCAGGGTTTCTCCCAGTTCTTGGTGTGCTAACACATTTTACAAAGAAGTAATTCATACAAATAAATCTTGCTTCAAACTGTTTTAATTTTAACAAATTTTATCCAAAACTGCAGACCCATTAACCTTCTGCAATCAGAATATCCTAATATTACTAACAACCGGAGCACCGTGATACCTACCACAAGTAATACTATGTCATGGTTCATATGTACTAACTTTACTCTGTCCATAATATTATTTAAAATGTTGTAGTGATGTGTTTCTAAGTTCTAGGCATGTGTTGTATATGAAACAAAAATAAAATTTCTTTTTATAATAGGACCAGTTGTCAAGAGAAGTCATTATGGGGATACAAGTATGTTAGAATCCAACACTGTTTTAGTCACTAGTACATCAAAACTGTATATAGTACTAAATATTGAAAAATATATTTAAATGTGATGTAGTTATTCAGCACTTGCCACTAATGAAGACAGTATACCACAACCACCCACAAATTATCTTTTGTTTTTTATTATTATTGTAAATGTCCTTAAACCAAATTTTAAAGCAAATGGTTCAAACATTTTTAAAAACTCTTACAGGGGATATAACTACCACTTCTTGTGGTAAATCATTAGTAAACAATTTTTTAGTAATGAACTTTTAAAATTTTTTTCGCAG
Seq C2 exon
TAGTCAGTTGTTGGAGAGACTCTGTGAATATACCGAAGGTCATCAGCGTGCAGAAATCTTTAACTGGACCCCAGAGTGTGCTGTGAGCCAGAAGTCATGTCCAGTTCCCCCATATGAAAGCCCTGTCTATGAAGAAGTAGTTATTGGCCATTTATCTGTGAATGTCTCCCCTCATCCTCACCCAGGACACAAACTGTATGCCATTCAGGAATATGGAAAAGAATTGTATAAACACAAAGAATCTGGGAACACCTCCATTTCTTCCACACCTTTTCAGAAGCAAAAAACAATTCGCACTGAGGAGAAACCTGAAACTAGTCACTGTAAGGAAGATTCCAGGTGTCTCCCATCCAGTCAGAACGATGGAAAGAGCTCCAGTGGAGAACCGCACTATGAATGTAAGCAGTGTGGGAAAGCATTCACTTCTTCTAGCTCTTTTCGTAGGCATGAAGAATATCACAGCCGAGAAAAATCCTATGTGTGTAAGCAGTGTGGGAAAGCCTTCCCCTTTCCTAGCTCCCTCCAAATACATGAAAGAATCCACACTGGTGAGAAGCCCTATATGTGTAAGCAGTGTGGGAAGACCTTTGCCCGTTCGAGCTCCCTGCTGACGCATGAGAGGATTCACACTGGAGAAAAGCCCTACGTGTGTAAGCAGTGTGGGAAGGCCTTCACCGATCGTAGTTCACTTCGATTCCATGAAATGATGCACAGTGGCGAGAAACCGTATAAGTGTACGAAATGCAGTAAGGCGTTTGCTTCCTCGGGCGCCTTTCGAAAACATGAACGAACTCACACAGGAGAGCAACTCTTCGTGTGTTTGCAATGTGAGAAGGTTTTTAGCTGTGAAAGCGCTTTTCGAACACATAAAATAATTCATTCTGGAGAATGTGTCTGTAAGCAATGTGGTAAAGCCTTCACTAGTCACAGCTCCGTTAAGTACCATGAATTGATGCATAGTGGAGAGAAACCCTATGTATGCAAGCAGTGTGGGAAAACCTTTAGGTCTCCAAAACAAGTTCAGATTCATAAGCGAACTCACACTGGAGAAAAACCTTACGTCTGTAAGGAATGCGGGAAAGCTTTTACCTTTCTCGGTTCCCTTCAATACCACGAGTTGATTCATACCGGGGAGAAACCCTATCTATGTAAACAATGTGGGAAAGCCTTCAGGTCTTCTCGTCAAGTTCAGATACACGAACGAACTCACACTGGAGAGAAACCATATGTATGTAAGCAGTGTGGCAAAGCCTTCTTTTCTTTGTATCATTTAAGAAGACATGAAGTAATTCACAGTGGCTCGAACCCCTACGTTTGTAAGCAATGTGGGAAAGCCTTTAGTTGGTTTAGTACCTTTCACAGTCATAAACAGACTCACACTGGTGAAAAACCCTATTTATGCAAGCAATGCGGAAAAGCCTTCTGTAGTCGCATATCATGGAGAAGACATGAGAAGGCTCACACCACAGTGAAGCCCTATGCGTGTGTGCAATGTGGAAAAGCCTTTCGTTCTCCTAGTTATCTCAAAATACATGAAAGGATCCACACTGGGGAGAAACCCTTTATATGTTCTCAGTGTGGGAAACCCTTCCGTTCTTTCCGATATGTCAAGTCACATGAAAGAAGCCACACTGGAGAGAAACCCTTTGTGTGTTCAGAATGTGGGAAAGCCTTCAGTTATTATAGCTCTTTCCATAGACATAGAAGAACTCACCAGGCAGTAACCTTGAACGCAGAACTAGAAGAGACGTCGTAACACCCGTAAGACTGCGCGTGAAGAAAACTTCTGTAAAGGTTAAATTAAGCAAGTGAAACACCTGGCCCTGCTCATGGGTAAAGAGAACTTTAGGCCAGACATGGTGTGGCACACCCTTCATCCCAACACTTGAAAGGCAGAGGCAGGGGATCTCAGAATTCAGGGCCAACCTGATCTACACACTGAGTTTCCGGTCACCGATGGCTCCATAGTGTGACTGTTTTGTATGAAGAGCAAGTTTGGCTGGAAGAGATGGCTTCCTTTGGTACATGTGCATATACTTGCCCGGTAAAATCTTTGCTTGGCAAAGTACAAGAAACTCAAGAGTATCGAGTAGTGGCCCAGTCCTCTCACAGGGTTTCATTTGTTCATTCCCATAAACATCAGCAATGTGAAGGACTGGATACAATTTTTTGTTTGTTTGGTTGGTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAATGCTGGGAATAAAGGCGTGCGCCACCATGCCCGGCTTTTTGTTTGTTTTAAGAATGCCTTAGAAAATGCAAAATCTGAAGAAACTATGTAAATATATTGAACTTACTAGAATTCACTAGGGATTTGTTTTTGTTTGTCGGAAATAGTCTTGCCATGTAACCCAGACTGTCCTCGAACCAATTATAAATCGTCTTGTTTCAACCTCTAGATGGTGGGGGTGAAAGCTGTCTGCTTCCACATCCAGCATCAGTCGTTCATACTCCCTCTACCCCTTTGATTTCTGCAGACATGGTTTCTCTGTGTCGTACGGGCCATCCTAGAACTCTAGATCAGGCAGGTCTCGAACTCAAGAGATTCACCTGTCTCTGCTACCCTAGTGATTGGGTTAAAGGTGTGTACCACCACCACCCAGCATTTTTTAAAGATTTATTTATTTTTTATTTATATGAGTACATTGCAGCTGTCTTCAAACACACACTAGAAGAGGGCATCTGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAACTGAACTCAGGACCTCTGACAGAGCAGTCAGTGCTCTTTACTGCCATCTCTCCAGCCCCCGCCCAGTATTCTTACAGAAACCTTTCTGGACTCCATGCTTCACATTTTTGCTTTAGAATATTATCTCTATTTTAGTTAATTTTTAAAATTGTGTGTAGATGCGTGTGTCTGTACGGATCTGTGCACATCCATGTAGTTCCTGAAGAGGGTGTGTCAGAGCCCCTGGGGCTGGAGTTAATGGCTGTGAGCTGTCCCATAGGTGTGCTAGAACCCATGTTCGCTGCCAGACTTCTGTTCAAGGAATGGCACTACGCCGTTTCTCTCGCCCCTAGAAAATGATCTTGACACTGTTTGAGATGGAGGATTACGTAAGTACAGGAGATGGAAACAAGAAAAGACCTTAGAAGGAATTACAAACAAAAAGTGTACTATCATTACAGTGATTTTCATTTTTATCTTTTTGTATCAAATCAGGTAGTTTTTTTCTTTCACTTTAAGTTATATACATTCACTGGTGAGTTGATAATTACTTGTTAAATGCCAGGAAACATAAAAAGTGAGTTGTTTTCAAGCCTTTGAGATTAATGAGTGGAGGAAAAATGACTTTTTGTGGATATTGAGATTTTTTTCTTGCCATTTTCTTTTTAAGACTGTCATTCTCTTCTATGAACAAGAAACTTTTATACTTTTTTGTTAACTTTTCTCTCTACCTGATGTTTTTTTCTAACATTTCTTGTCGCCATGCCCTTTACACAACTTTCAAAACACTTTTAGGTTATCAAATGTTAACTCTTGTCTATGTAGAAGGTAGGTATAAATGTCGCTCTATAATCATAGATTGACATCACATTTAGAAGTTGTTTCCATGTCACAAGCTGTTCTTACTGTACATGTATACTTAATAATTTGCTCTCATGTAAATGTTGCTTTTCATGCTTATTTTGTTGTATCTTTGATTTTTTTATTGTAATTTCTCCTGTCATTATACTAAAAGATATATTGGCATTAGTGGCTTCTTGCCAAAGACTAAGCACCGTGTAATAAATCATAGTCAATCTCTCCATATATATACATATACATACATATATACTATATATATATATATATATATATATATATATAGTAGCTAAGTATGCCTCATCAGTGAGAACATTGCATAAATGTTCTGCAGGTATTGGTGGTTAGCTTATAAGGCTTTATGGGATTCGTTAGATATAGTTAGGTGCCTCTTGAATGTACTGAGATGTGAGTATAATTCCATATTTGTTAATTGTGGTTATTATTTGGAGGTCCTCAAACAGTGCAGTGCAGGAAGCTTTAATCCATGAGCATAGCTCGGCACGTTAGTGAGGAGAGGGTACTTTGCTCACTTTCATGACTCAGGATGTTTTACGTTTTGTTGGATTTACGGACAACTTTACAGGGTGGCCTTTTCTTTTGTCCTAGTTTGGGACACCTGCCTTCATAGCCGAAGACTGGCCTTTGCTTTGAACACCTGTGTTCTGGGCCAGTTTTTAACCTTTCAGAGTTTCTATACCAACACAATATTTCCTCCAATATATTGGTTGCTAGTCTTAACAAATGCAAATGTTCCTAATTACCCATTGGTTATGTTCTCATAACCAATGCAAGGGGTAGCCATAGCAATGAAAGGGTAACCATAGCAATGAAAGGGTAGCCATAGCAATGAAAGGGTAACCATAGCAAGAAATTGTACTCAACCTATTGAACATGAAACTTTAGGCATTTCCAGGTCTCTTACATTAGGCCCAGATAGGGGGAAGTAATTTCTTATGCATATTACTTTTAGCTTTAAATTAAAAAAAAATGGCATGTATTATTGAGCAAAGTAATGGTTTTTGTCATGATATTTTGACAGTTCTACATATTTGACTCTCTTCACCCATTTTTTTTTCTATCTCCCAACCCCTTCCCTCTGCCTAATGGTCCTCATTTCCTCACAAGTAGACCCTTAGAGTCTCTCTTTTGCCTACTAGAGTCTGTGTATGCTAAAACACAGGCTGTGTTGGCTGAGCCTGGCTTCTTTCATTTAATGTGATTTCTAGTTCCCTTCAGTTCTCTGGGCATCAGTGTATGCCATCGTATATTTGTGGAGGTCAAAGCAGTTTTAGGAATCTGTTCTCATGTCCTACCTTGTGGAGGAAAGGTCACTTACTTATGCCATGCTGCACACTGCAGGCATCTAGCCCACCAGCTTGCGACCGATTCACCTGTCTACACACACACACACACACACACACACACACACACCATGCGCGCACACACACACACACCCATCTCCCTAAAGGAGAGTTAGGTGCTACCATATCTGAATTTGTATGTGGTCCCCAGGGAGCCAGGTTTGCTTATCAAGTACATTTATCTATTGAACCATCTTCCAGGGCTCTTAGGTAGTAAAATTTTATACAACCAAGTGTTCTTTCTGGATCCTGGACATTATGGTTAGGCACCAGGGTCATGGGGAGTTAGGCATGGAATGAATGTTCTAGAAGACCTCACATACAGATCACTGGATCAGATTCCAAGCAGTCAGGAGTCTGATTATTAAGGTATAGTCATATTTGCTTTTATTTTGATTCTTTCACTCATCTACATTCTTTCCAATCTTCTTAGCAATTATAAATACAAATATGTTTAATATAATTCTACTACTGGGTGTGGTGCCCTTAATCCGAGCACTTGGGAGGTAGAGACAGAGGCAGGTTGAATCTCTGTAAGTTTGAGGCCAACCTGGTCTACTTAAATGAGGTCCAGGCCAGCCAGAGGTAAATAAATTGTAAGATTGTCTCAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000095253:ENSMUST00000202988:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0202611=RyR=PD(17.3=42.9),PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGAAACTCTCTGGAGAAAACT
R:
TTTCAGGTTTCTCCTCAGTGCG
Band lengths:
342-1020
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types