Special

MmuINT0179888 @ mm9

Intron Retention

Gene
ENSMUSG00000074194 | Zfp791
Description
zinc finger protein 791 [Source:MGI Symbol;Acc:MGI:3648473]
Coordinates
chr8:87633066-87636169:-
Coord C1 exon
chr8:87636109-87636169
Coord A exon
chr8:87634942-87636108
Coord C2 exon
chr8:87633066-87634941
Length
1167 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGCTTCTTTTTTTTTTCCAGAAG
3' ss Score
9.12
Exon sequences
Seq C1 exon
CGAGTGAATTGGAAGACCAGGATGTTTCAAATCAGTACAGAATCCAAGAGGAAAATGTAAG
Seq A exon
GTGAGCTTACACACTAAAGAAAACAGAATCTTACATTTTTAAATTAAGCAACCAAAAGAAACTCCTATATGGTTTTCTTTTTAAAAAAAATGTTCCCGCGTCGTCCCCACGGCGGCGCGGGGTCTCTCTCCCCCCGCCGGGCTTCGGGACCGGGGTGCGGTTCGGAGAGCCGTTCGTCTTGGGAAACGTGGTGCGGCCGGAAAGGGGGCCGCCCTCTCGCCTGTCACATTGAACGTGGAACCTGGCGCTAAACGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCCCTCGCTGGGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTAAAAAAAGAAAAAAGAAAAAAATGTTTAGCAAAGTATTTTAAATGATACATATTGAACATTTAAATATTATTACATAGTTGTCATGGTTAGGGTTGCCTGTGAAGAGACAAGCATTTAATTGTGGCTGGCTTACAGTTTCAGAGGTTTAGTCCATTATCATCATGGTGGGAAGCATGGCAGCATCCAGGCAGGCCTGGTCCTGGAGGAGCCAGGAATTCTACATTCTGATTCAAAGGCAGCTAGGAAGAGACTATCTTTCATTCAGGGCAGAGTCTGAGAGAACTCAGAGCCCACCTACACAGTGACACACTTCCTCAAACAAGGCCACATCTCCTAATAGTGCCACTTTCTATGGCCAAGCATTCAAACACATGAGTCTATGGGGGCCAAACCTATTCAAACCGCCACAGTGGTGCACATCGGTAATCACAACTTTGAAGACAAAGGCAGGAGGATCATAGTAAATTTAAGGCAGGAGGGGGGCTTTCTCCAGGCCCTGGATTAATGTTTTGAGACAGGGATCTGCTGTATAGCCCAAAACTCCTAACAGTCCTCCTGCCTCAGCTTTCCAAATGCTGGGATTACAGGCATGGGCTACCAGCCTAGCTTTTGCTTTTATTTTGAGATAGACCCTTGCTTTATAACATTAACTGCCCTCACATTTGTGATCCTCCTGCCTCAGCCTCCTACGTGTTAGTATTAGTGGTATGCCAGCATGCCATGGCTATAAAGATGTAATCCTGATGTGTATTAGTGAACATTAAATAATAATTAATATTGGGATAATAATATTAATAACGGGCTTCTTTTTTTTTTCCAG
Seq C2 exon
AAGTTATGTGATACAAAGACTCTATGAAAGTAAAGAAGTTATTGAGCATGGAGAAAGCTTCAGCCAGATTCCAAACACTGGTGCGGCCAAGATAACTTCTGGAGGAAAGCCGTATAGTTGTAGCGTGTGTGGAAAAGGCTTCATGCTTTGTTCATCCCTCACTAGGCATGTCAGAGCTCACCCTGGCCATGAACTTGCTGGGTTTAAGTGTGGAGAGAAGCGATTTAAATGTAAGGAATGTAGGGCCACTTTCAGTTACCTCAAATCCTTTCAGAGACATGAAAGGACCCACGCTGGAGAAAGCCCCTACAGGTGTAAACACTGCGGGAAGACCTTCATCTATTTCCAGCCCTTTCAAACACATGAACGGACACACATTGGAGAGCAACTCTATCAGTGTAAGCATTGTGGTAAAGGGCTTAGTTCTCCAGGTTCTCTTCGAATTCATCAAAGAATTCACACCGGGGAGAAGCCCTATGTGTGTGAGAAGTGTGGCAAAGCCTTCAGTTGTCCCAGTTCCATCCAAATCCACGAAAGAACCCACACCGGGGAGAAGCCCTATAAATGTAAAGAATGCGGGAAAGCCTTCATATCCCGCACAAGTGTCAAAACGCACATGGTGACACACAGCGGCGATGCAAACAAGCCTCATAAATGCGAGCATTGCGGGAAGGCGTTCCTTCGGCCATGTTTTCTGCGAGTGCATACGCGGATTCACACTGGAGAGAAGCCGTATGTCTGCAAGCAGTGTGGTAAGGCCTTCAGATGTTCCACTTCGATGCAGATCCATAAAAGGACTCACACCGGGGAGAAACCCTACAAGTGTAAGGAGTGCGGTAAAGCTTTCAGTGCCCATTCGGCGTTTCGAGTCCACAGGCGGGTGCACACTGGAGAGAAGCCTTATAAATGCCGAGACTGTGGGAAAGCCTTCATCTGCCTCACGTACTGCCGCGCGCATGAGCGGAAACACAGCGGAGAGAAGTCCTACGAATGCGATCAGTGCGGGAAAGCCTTCGTCTCTCTGGAAAACTTTCGACGACATGTCAAAACTCACGCTGAAGATACACCTTATAAATGTAAGGAGTGTGGAAAAGCTTTCGTTTTCCTCAGCGCCCTTCAAGCGCATGAGAGGATCCACACTGGGGAGAAGCCTTACGAATGTGAACAATGTGGCAAAACCTTTAGATGTTCAAGCTATGTTCAGGTACACAGGAGAATCCACACCGGGGAGAAGCCCTATGAATGTAAGGAGTGTGGGAAAACCTTCATTTATTCTACGAGCTTTCGAGGGCACATGAGAATGCACACGGGAGAGAAACCCTACAAATGTAAGGGGTGTGAGAAAGCCTTCAGGCTCGGCAGTTCCCTTAAAAGACATGAGAGAACTCACAGCTGAAAGAAATGTGCTTAGTGTACGCATGCATGGGAGAACTTTTTGCTTTGTCCACATCCTTCAATAAACATGAAAATGCACAATAGACAACGAATGTGAGGAATGGGGGGGGGGGTTGAACATTTTCAATCTTAACACTTTGTTGTGAAATTATCCATTGTGGAGAAATCTCATGCTATTAGTTCATTAAGTAATACCAGAAACTAACTGCGGTGTAATAGGAAACTGACATCAAGTGGGCCATAAAATTCAAAATGTTGAGGAAACATAAGAGCTAAATATGTTCATCGGGGTTTAATTGTTTCTGATATATCTGCATGCTTTGGTTTGTTGCTGTAGCCCTGACTGGCCTGAAGTTCACTATGTAGACTAAACTGACCTCCAACTCAGAGATGTGTGTGTGTGTGTGTTTTAGAAGAAAGATTATTTTATAGTTCCAGAAGAATAATTGTCCATTGTAAAGTAACCTTTATTTGCCTGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074194-Zfp791:NM_001037745:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.022
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0135222=KRAB=PD(0.1=0.0)

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=7.5),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=5.4),PF046067=Ogr_Delta=WD(100=9.9),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134511=zf-trcl=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000096150





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr19:12465734-12466461 
HsaINT0188206
Human
(hg19)
chr19:12576548-12577275 
ALTERNATIVE
HsaINT0188206
(ZNF709)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr7:14013956-14014337 
LOW PSI
BtaINT0166117
(ZNF791)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGGAAGACCAGGATGTTTCAA

				
R: 
GCGTGGGTCCTTTCATGTCTC

				
Band lengths: 
346-1513

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"