MmuINT0179581 @ mm10
Intron Retention
Gene
ENSMUSG00000066880 | Zfp617
Description
zinc finger protein 617 [Source:MGI Symbol;Acc:MGI:2684459]
Coordinates
chr8:71929138-71934629:+
Coord C1 exon
chr8:71929138-71929198
Coord A exon
chr8:71929199-71932018
Coord C2 exon
chr8:71932019-71934629
Length
2820 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
GTTCTACATTTTTGTTACAGATA
3' ss Score
8.88
Exon sequences
Seq C1 exon
GACAGAAATTGGGAGAACAGAACACTGAAAATGCATACAAAAATCCTGGGGGAAATCTAAG
Seq A exon
GTAATTTGCACTCACAAGAAAAAGTAATACTTCTCAGGAAACTTGGAATTGCAAAAAATATTTCAAACAAACAAACAAAACAAAGTAAGCCAATCTTCAAAGTGATTTACTTTCTAAATATCTTTAAATATACCTACTGACTGAACATCTGTAATTCAGAATTTTAAATATGAATTTACGTATAAACATGATACCACAAATGATACTTTCTAATGTTTTAATGTTATACAAACTTCGTTTCATACCCAAAATTATTAAAGAGATTTTTGGATGCAAGGTATGTTTGCATTTAGGTTTCACCTCATATATGTTCTAAGACTTTAAACTCTTAACATATTTGTTCTTTGTGTTTTGGATGAGGAATGCTTAAGCTAACAGATTTTCTTTCTTTTTTCCCTTTTTTTCCTTTTTGGAATTTTTTGGGTGGGGGGTTGGTTTTTTTAATTAATTTTTTTTTTTTACTTAATCATTTTATATCTGCTCACTGACCCCTTCTAGTCACCCCCTCTCACAATCCTTCCCCCATTCCCTTCTCCCTTTCTCTAATCAGGTTTCACCTCCATCCCCACCCCCCAGTATCCCTACACTCTGGCACCTCAAGTTTCTGTGAGTCTAGGTGTTTCCTTTCCCATTGAGGCCAGACAAGGCAGCCCAACTAAAAGAACATATCCCACAGACAACAGCTTTTGGGATAGCCCCCATTCCAGTTGTTCAGAACCCACAAGAAGACCAAGCTACACATCTGCTACATATGTACAGAGAGCCCAGGTCTAATCCGTATATGGTTTTTGATTGGTGGTTCAGTTTCTGAAAGGCCCAAAGGTCCAGGTTAGGTCTGTTGGTCTACCTGTGGAGTTCCTATCCCCTTCAGGGCTATGCAATCTTTCCTCCTATTCTTTCATAAGAGTCTCCAAACTTTATCCACTGCTTGGCTGTAAGTGTCTATATCTGCCTGAGTCAACTGCTGGGTGGAGCCTCTCAGAGGACAATTTGCTCCTGTCTGCAAGCATAACAGAGTATCATTAATAATGTCAGGGATTGGTGCTTGCCTATGGGATTGGTTTCAAGTTGGGCTGGTTATTGGTTGGCCATTCCATCAGTCTCTGCTCCATCCCCCAGTGTCTACATTTCTTGTAGACAGGATAAATTTTGAGTTGAAATGTGTGTGGGTTGGTGTCTCTATCACTCCCCTGGAATTCCTGCCTGGCTACAGAATGTAGATGTGGCCTCTTCAGGTTCCATATCCCTAATGTAGTGAGTCATAGCTAAATTCACCACCATTGATTCTTGGGTGCTTCCCTTATCCCAGGCCTCTGTCTCATCATGGAGATGCACCCTACCTCCTCACCCCAGTCAGTTGCAGATTTCCATTCACTTTCATGGCCATCTAAGCCTGTCCTTCCCCACCCATGATCCTGAAACCCCCATTCCCCTCCCCATGCTGCTTCCTCCCAGTTTCCTCCTTCTGTATGCCTCTTATGACTATTTTTTCCCCCTTCTAAGTGAGATTCAAGCTTTTTCACTTGGACCTTCCTTCTTGTTTAGCTTCTTTGGGTCTGTGTATCTGATTTTTATGGCTGATATCCACTTATAAGTGAGTATATACCATGCATGTCCTTTTGGGACCGGGTTACCTCACTCGGGATGATAGTCTCAAGTTCTATCCATTTGCCTGCAAAATTCATGATGTCTTTGTTTTTTGGGTTTTTTTTTTTTTTTGGTTTTGGGTTTTTTTGTTTTGTTTTTAAAGATTTATTTATATAAATATATGTAAGTACAGTGTAGATGTCTTCAGACATTCCAGAAGAGGGCGTCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTACTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTCTTACCCGCTGAGCCATCTCACCAGCCCCGATGTCTTTGTTTTTAATAGCTGTTTTTAATAGTATTTCATTATGCAGATGTACTACATTTTCTTTATCTGTGCTTGAGGTGAGGGACATCTAGGTTGTTTCCAGTTTCTGGCTGTTAGAAATAAAGCTGCTCTGAACATAGTTAAGCAAGTGTCTTTGTGGGATGTTGGAGCATCTCTTAGGTGTATGCCTAGGAGTGCTATAGCTGGGTCTTGAGGTAGAACTATTCCCAGTTTTCTGAGAAACTACCAAATTGATTTCCAAAGTATTTGTACAACTTGTACAAGGTTGTTTGTTTGTTTGGTGGTAGTGGTAGTTTTTGTTTTGTTTTGTTTGAGACAGAGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTGTAGACTAGGCTGGCCTTAGAAATCCACCTACCTCTGCCCTGAGTGAGGTAACCCAGTCCCAAAAGGACATGCATAGTATGTACTCACTTATAAGTGGATGTTAGCCATAAAATACAGGCACCAGAAACACAAGGAAGCTACACAAGAAGGAAGGCCCAAGCAAGGAACTTTGAATCTCACTTAGAATTGAACTTAGAAATGTGCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTACTGGGATTAAAGGCATGCACTATCACTGTCTGGCTGTAACATAGATTTTTTTCAATGTTTGCAAAATAGTTAACTTTGGGGAAAATACTGAGAAACCCCACATGATTACCACTGCTTTGACTAGTGGTATTTAAGCTGTCTTATTGAGTCTTCACTCCATTTTGTACCGTTTATTTAGAATGTAAAGCTTACACTTTTCCTGATAATGTAAGAAAGTAAGTTTTCTACCTTTAAATAAGTGTAAAATCATTTTGTATGTTCTACATTTTTGTTACAG
Seq C2 exon
ATACCAAGTGGTAGAGAAGCTTTGTGAGTATGAAGAAGATAGTCAATGGGAAGAAATCTTCAGTGAGATTCCAGATCCTGTGGTGAGCCAGAAAACTGGAGAAAAGCCCTGTGAAAGCCATGTGTATGGAGAAGATATCACTGGTCATTCATCTCTAAATGTGTCCCTCAGAGGTCAGACTAGATGCAAAACACATGAGTATAAAGAACACGGAGAGAAGCCATGTAAATGTAAAGACAGTGGAGTGGCTTTTGGTTCTCCCCAGAGCTTTCTGAAGCATGAACAAATTTACACACAAGAGAAACCCTATGCCTGTAAACAGTGTGACAAAGCCTTTAAGTATCTCAGTTCTCTTCAAAATCATAAAAGGATCCATAATAGAGAAAGAAACCATGCGTGTAAACAATGTGGGAAATCTTTTAAGAGACAGAGTAATGTTCAAGCCCATGAGAGAAATCACACTGGAGAGAAACCCTATGTGTGTAAGCACTGTGGGAAAGCCTATACTTCCTACAGTACCCTTCGAGCACATGAAAGAAGTCACACAGGAGAGAAACCCTATGTGTGTAAGCATTGTGGGAAAGCCTATACTTCCTACAGTACCCTTCGAGCACATGAAAGAAGTCACACAGGAGAGAAACCCTATGTGTGTAAGCATTGTGGGAAAGCCTATACTACCTACAATACCCTTCGAGCACATGAAAGAAGTCACACAGGAGAGAAACCCTATGTGTGTAAGCATTGTGGGAAAGCCTATACTTCCTACAGTACCCTTCGAGCACATGAAAGAAGTCACACAGGAGAGAAACCCTATGTGTGTAAGCATTGTGGGAAAGCATTCACTCAATCTAGCTACCTTCGAATACATAAAAGAACTCACACAGGAGAGAAACCCTACATCTGTAAGCAATGTGGGAAAGCCTTTGCTCGTTCTAGCCACCTGCAAATACATAAAAGAAGTCATACAGGAGAAAAACCCTATGTATGTAAGCAGTGTGGGAAAGCCTTTGCTCAATCCAGTTACCTTCACATACATCAAAGAAGTCACACTGGAGAGAAACCTTACGTATGTAAGCAGTGTGGGAAAGCCTTCACTCGTTCTAGCCACCTGCAAATACATAAAATAACTCATACTGGAGAGAAACCCTACTCATGTAAGCTTTGTGGGAAAGCCTTTACTCATTCTAATTACCTTCAGATACATAAAAGAATTCACACAGGAGAAAAACCTTATGTGTGTAAGGAGTGTGGGAAAGCCTTTGCTCGTTCCACTTCCCTTCACATACATGAAGGAACTCACAGTGGAGAGAAACCTTATGTATGCAAGCAATGTGGGAAAGCCTTCACTTTGTCCAGTTCTCTTCGAAGGCATGATGTAGTTCATTCAGAAGAGAAACCCTATATTTGTAAGTGTTGTGGGAAAACCTTTGGTTGTTACAGTAGCGTTCAGAAACATGAAAAGACTCATAGAGAAAACAGACTCTGTTAGTGTAATAAATATGGGGAAACTTAGTTGCTCTGATTCTTTTCAAATACATGACATAGCTGACACTGGAAAGAAACCCAAGGTTTGTATCCATTATGGGATGCTTTCATTGACCTTAGTTCTTTTTAATACCATGGAAGGATTCACACTGGAGAAAAACTTCTGGATATAATACAGAAAAATGTTCATTTATTCCGCTTCTTTAACAAACATGGAAAAACTTACACTGGAGAGAAATCCTAAATATAAAATGTGGAAACCCTTCATTATCACTTGACCGTCTAAAATTCATGAAAATGTGTAATCCATAGCATGAAGAAGTATTTTCGATCCATTTGCAAATGCAAGATAACAGTATGGAAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCCACAAAGTGAGTTCCAGGACAGCCAGGACTATACAGAGAAACCCTGTCTTAAAAAAAAAAAAAAAAAAAGATAACAGTATGGAGAGAAAACCCTTGAATAAAAATGATACACTAAGAATAGGCTCTTCAGACGGCCCACATGCAACAATGCACATGGAATCGGAAGATTGAGTATGAAAAACACAGCAGTTTTCTGTTTTCCTGTGTGCGATGGCATATACCTATAATTCCAGTACTTGGGAAGTGTAAAACTAAAGATCAAGAGTTTTGAGTTCTGGGCTGTGTTGTCTACCTGATAAAAGAAATTTTTGTGTGTTATTTTTCTTTATTCTTAATAATTTCAATCGTATATACAATGAGTTATGAGCATATTATTCCATTTTCTCCAGCCCATTAAATCCAGTTACTGCTGCTCATGTGTACATGAGCATAGCTACTTCCTCAGAAGCTGTCAACTGTCAATAACTCCTCAGTAAGGGGTGAAGGTTCAAGATCATCTACCCCATTAATGCTAGAATTTTGGCTGTCTTAACCAAATGTAGGTAATCACAAATACTACAAAGTCATGGATATAATAGCCATATAGTGAACAAAAGACTGCATTTCACACTACCCCCATCTGACTTGTATTCTTTCTACCTCCTAGAAAATTGTTTTAATAAAGTTTGATTTTTCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066880:ENSMUST00000119003:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types