RnoEX0101749 @ rn6
Exon Skipping
Gene
ENSRNOG00000050600 | Zfp872
Description
zinc finger protein 872 [Source:MGI Symbol;Acc:MGI:3588272]
Coordinates
chr8:23193492-23195928:+
Coord C1 exon
chr8:23193492-23193552
Coord A exon
chr8:23194809-23194923
Coord C2 exon
chr8:23195613-23195928
Length
115 bp
Sequences
Splice sites
3' ss Seq
GCATGTACACACAAGTGCAGGTT
3' ss Score
-0.73
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GGGGAAATTGGGAAAACCAGAGCACTGGGGATCAGTGTAAAACCCAGGAAAGAGACATAAG
Seq A exon
GTTCCCACAGAAACCAGAGAGCATCAAATTCCTTGGTGAGCCAGAGTTAAAGGTGATTATGTGCACCACACGTGGATGCTGGAAGCCAAACTCAGGTCCTCTGTGAGAGCAGCCA
Seq C2 exon
CGCTCACATAGAACAGAGACCACGTGAATGGGAAAGTTCACCCAGGGAAATCGTCACCCAGGTTCCAGTTCTTAAACAGAAGAATGTTCTCCCCGGAGTAAAACCCTACGAATGCAGAGTATGCGGGAAAGTTTACTCATGTTTGTCCTCTCTTAAAAGGCACACTCAGTGTCATAGCAAGCATGCATGGTGTGGGAGTCACATATTCGGAGGAACATCATACCAGTGTAAGGACTGTGGGAAAACATTCATTTTTCAAAGTTCATTTCGAATACACGAGAGGACCCACACTGGAGAGAAACCCTATAAATGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050600-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.548 A=0.029 C2=0.066
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF134651=zf-H2C2_2=PU(65.4=16.0)
Main Inclusion Isoform:
ENSRNOT00000071703fB17020
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGATCAGTGTAAAACCCAGG
R:
TCCTCCGAATATGTGACTCCCA
Band lengths:
249-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]