HsaINT0188419 @ hg38
Intron Retention
Gene
ENSG00000173875 | ZNF791
Description
zinc finger protein 791 [Source:HGNC Symbol;Acc:HGNC:26895]
Coordinates
chr19:12624650-12631921:+
Coord C1 exon
chr19:12624650-12624710
Coord A exon
chr19:12624711-12627720
Coord C2 exon
chr19:12627721-12631921
Length
3010 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTGCTTCTAATTTTTTACAGAAG
3' ss Score
8.42
Exon sequences
Seq C1 exon
GGGAAAAATGGGAAGACCCGAATGTTGAAGATCAACACAAAAACCAAGGACGAAATCTAAG
Seq A exon
GTGAGTTGCACTCACAAGAAGTAACAGTGTTCCTTGAAAGAATCTTAAAAATGTTATGGCCGGGCACGGTGGCTCACACCTGTAATCTCAGCACTTTGAGAGGCTGAGGTGGGTGGATCATGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGATGAAACCCCGTCTCTACTAAAAATACAAAAAAAGTTAGCCAGTTGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGAGAATTACTTGAATCCAGGAGGCAGAGGTTGCAGCGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAGAAGTTGTGACACTTTTAAAACAAGAAGCAAGCTTAGCTCCAAATTTATTTATTTATTTGTTTTATTTATTTTTTCTTGAGATGAGGTTTTGCTCTGTCACTCAGGCTGGAGTGCAGTGGCATGGTCTTTGCTCACTGCAACCTCCACCTCCCGGGATCAAGTGATTTTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGGACGTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGCAAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCGCCTCAGCCTTCCAAAGTGCTGGGATTACAGGCACGAGCCACTGGGCCCCAAATTTATTTATTATCAGAAAATGTTTACCAAAAATGTTTTCTCAAGTGACACAGATGTCCACTGGCTGAAAAATATTATACTTGGGCCGGGCACTGTGCCTCACGCTTATAATCCCAGCACTTTGGGAAGGTGAGGTGGGCGGATCACCAGAGGTCAGGAGATCAAGACCAGTCTGGCCAACACAGTGAAAACCTGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGCACACACCTGTCATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCCAGATCGCACCACTACACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAAGAAAAATATTGTACTTGGGAACAGTTTTGTTTGTTTGTTTGTTTTGTGAAACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGGAGTGGTATGATCTTGGCTCACTGCAACCTCTAACCCCTGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGATTATAAGCGCGCACTACTATACTGGGTTAATTTTTGTTTTGTTTTGTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCAGGCTAGAGTGCTGTGGCGCAATCTCGGCTCACTGCAACCTCCCACTCCCTGGTTCAAGGGATTCTTCTGCCTCCGCCTCCCAGGTAGCTGGGATTACAGGCATGCATCACCATGCCCGGCTAATTTTTGTGTTTTTAGTAGAGATAGGGTTTCACTATGTTGGCCAGGATGGTCACGATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCAGCCAATTTTTGTATTTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCTGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGGGTGAGCCACCATGCCCAGCCAATTTTGTATTTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCCCAATTGATCCACCCACCTCGGCCTCCCAAAGTGCTAGGACTACAGGCATGAGCCACCATGCCAAGGTGTGGAAACAGTATTTTATTTTATTTTTATTTTTATTTTTGAGACGAAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCCATCTCAGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCACCACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCCTGTTAGCCAGGGTGGTCTTGATCTCCTGACCTCATGATCTGCCCGTCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCGCCCAGAAACAGTACTTTAAAGCCTCACATATAATTTCCGGAAGCCAAGGTGAGCAGATCATTTGAGCTCAGGAGTTCGAAACCAGCCTGGGCAACAAGACGAGACCCTGTCTCTACAAGAAACAGAAAATTCAGTCAGTTGTGGTGGTGCATGCCTGTAGTCCCAGCTACATGGGAGGCTGAGGTGGGAGGATTGATTGAGCCCGGGAGGTCAAGGCTGCAGTGAGCCATGATTGCATCACTGTACTCCAGTGCGGGTGACAGAGTGAGACTCTGTCTCAAAATGAAACCAAAAAAAAAAAAACCCATACCTCAATATTACTGTTTTGATAATAGCTATCAGTGACACAAGCCCTCTTGCAGAACATTGAGTATATTCGTTTTTAAACAAGTCAGACGGGGCAGAAAACTATTTCCCTGAAAATGATAAAAATTTAGTTCTGCTGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGACCAGCATGGTGAAACCACGGCTTTACTAAAAATACAAAATTAGCTGGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTTGGGAGGCCGAGGTAGGAGAATTGCTTGAAGCTGGGAGGTGGAGGTTGCAGTGAGCTGAGATCGCACCATTGCACTCCAGCCTGGGGAACAAGAACAAGACTCCGTCTCAAAAAAGAAAAAAGAACTTTAGTTCTACTACCCGATAATACATATAAAATCATTAATACACAACCAGTATTACCGTGCTTCTAATTTTTTACAG
Seq C2 exon
AAGCCATACGGGAGAGAGACTCTGTGAAGGTAAAGAAGGTAGTCAATGTGCAGAAAACTTCAGTCCCAATCTCAGTGTGACGAAGAAGACTGCCGGAGTAAAACCATATGAGTGTACTATCTGTGGAAAAGCCTTCATGCGTCTCTCATCCCTTACTAGACACATGAGGTCTCACACTGGATACGAGCTATTTGAGAAGCCATATAAATGTAAGGAGTGTGAGAAAGCCTTTAGTTATCTCAAATCCTTTCAAAGACATGAAAGGAGTCACACTGGAGAAAAACCCTATAAATGTAAACAATGTGGAAAAACCTTCATATATCACCAGCCCTTTCAAAGACATGAGCGGACTCACATTGGAGAAAAACCCTATGAATGTAAGCAATGTGGAAAAGCTCTTAGTTGTTCCAGTTCGCTTCGAGTTCATGAAAGGATTCACACTGGAGAAAAGCCCTATGAATGTAAACAATGTGGGAAAGCCTTCAGTTGTTCCAGTTCTATTCGAGTACACGAAAGAACTCACACTGGAGAGAAACCCTATGCATGTAAGGAATGTGGGAAAGCCTTCATTTCCCACACAAGTGTTCTAACACACATGATAACACACAACGGAGATAGACCTTATAAATGCAAAGAATGTGGAAAGGCATTCATTTTTCCCAGTTTTTTACGAGTACATGAAAGAATTCACACTGGAGAGAAACCCTATAAATGTAAACAATGTGGTAAAGCCTTCAGATGTTCCACCTCCATTCAAATTCATGAAAGAATTCATACTGGAGAGAAGCCCTATAAATGTAAAGAATGTGGGAAATCTTTCAGTGCACGCCCAGCCTTTCGAGTACACGTGAGAGTGCATACTGGAGAGAAACCCTATAAGTGTAAAGAATGTGGGAAAGCCTTTAGTAGAATCAGTTACTTTCGAATACATGAAAGGACTCACACTGGAGAGAAACCCTACGAATGTAAAAAATGTGGGAAAACTTTCAATTATCCTCTAGATTTGAAAATCCACAAGAGAAATCACACTGGAGAAAAACCCTATGAGTGTAAGGAATGTGCAAAAACCTTCATTTCTCTTGAGAACTTTCGAAGACACATGATCACCCACACTGGAGACGGACCTTATAAATGTAGGGACTGTGGGAAGGTGTTCATTTTTCCTAGTGCGTTACGAACACATGAAAGAACTCACACTGGAGAGAAACCCTATGAATGTAAACAATGTGGAAAAGCCTTTAGTTGTTCTAGTTACATTCGGATACATAAAAGAACTCACACTGGGGAGAAACCTTATGAATGTAAGGAATGCGGGAAGGCCTTTATTTATCCCACAAGCTTTCAAGGACACATGAGAATGCATACTGGAGAGAAACCCTATAAATGTAAAGAATGTGGGAAGGCCTTTAGTCTTCACAGTTCCTTTCAAAGACATACAAGAATTCACAATTATGAGAAACCTCTTGAATGTAAGCAATGTGGAAAAGCCTTCAGTGTGTCCACATCCTTAAAAAAACATATGAGAATGCACAATCGATAGAAACTCTATAAATGTGAGAAATAGGAGAAAGTTTTCAATTCTAACAGATGCTTTCAAAGTTGTGAAAATTCCCACTGAAGAGAGAAATCCTGTCAATGTAAGTAATATAGAAAGCGAGATACAAGATGATTCATGTATAGTCAGGTACCACATAATCATGTTTCAGTCAGCAATGGACCATATAGGTTGGTAGCCCCATAAGATTATATAACACCTAAAACATTTCTATCAACCGCAATTTAGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTGGTGTAAACGTGCTGCACTTTCAGTTGTATAAAAGTACAAGACAGCGGCCGGGGACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGCCAGGAGATCAAGACCATCCTGGCTAACACGGTAAAACCCCATCTCTACTAAAAATACAAACAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATAAACCCAGGAGGCCGAGCTGACAGTGAGCTGAGATCCGGCCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAGTACAACACAGCTGGGCATGGTCACACCTGTGATCCCAACACTGGGAGACTAAGGCAGTAGGATTGCTTGATGCCAGGACTACTCTGGTCAACCTAGTGAGACCCTGTCTCTACAAAAAATAAAAACATTTTCTAAGTGTGGTAGCACACCCTGTAGTCCCATCTACATGGGAGGCTGAGGCAGGAGGATTGCCTGAGCCCAGGAGTTCAAGGCTACAGTGAACCAAGATCACGTGATGGCAGTCCAGCATGGGTGACAGTGAGACTGTATCAAAAAAAAAAAAAAAAAATTGGCTGGGCACAGTGGCTCATACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGAGAATCAGTTGAGGTCAGGAGTTCAAGACCAGCCTGGTCAACATGATGAAACCCTGTCTCCATTAGAAATACGAAAATTAGCTGGGCGTTCTGGTGTGCCTGTAGTCCCAGCTACTTGGGAGGCCAAAGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGATTGCAGTGAGCTGAGATCTACCACTACACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCGAAAAAAAAAAAATTACAGCACAGATGTGCAATATATACTTGATAATAAATGGCTAAGTTACTGGTTTATATATTTACAATCCTGTTTTAGAATGTATTCCTGTGTTTTTTTAACAGTAAGACAGTCTCAGGCAGGTCCTTAAGGAGATATTCCCGGAAAAACTTTGTTATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGGGACAAAACATGGAGGCAGAAGACAATGATATTGATGATCCTCACCCCGTGTAGTCCTACACTAATGTGTGTTTGTGTCTTAGTTAGTCTTTAACAAAAATAGTTTAAAAAAATTTAATAGAAAAAGCTTATAGAATATGGACATAAAATATTTTTGTACAGCTGTACAATGTGTTTTAAGCTAAATTATTACAAAGTTTTTAAAAATAAGTTTATAAAGAAAATAATGTACAGTAAGTTAAGGTTTATTCATTATTGAGGAAAAAATGTTTTTATGAATGTAGTGTAGTCCAAGTGTACAGTGTTTATAAATTCTCCATTAGTGTACAGTAACATCCTGGGCCTTCGCATTCACTCACCACTCAACTGACTCACCCAGAGCAACTTCTAGTCCTGCAAGCTATGTTCATGGAGTGTCCTATGCAGGTGCATCCTTTTTTATCTTTTATACTGCATGTTTACTCTGTGTATTTTCTGTGTTTAGACTCATAAATACTTAACATTTTGTTACAATTTCCTACAGTGTTCAGTACAACAACATGTTGTATGGTTTATAGCCTAGTAGCAATAGACTGTACCATATAGTCTAGATGTGTTGTAGCTATACCATCTAGATTTGTGTAAGTTCACTTTGTGATGTTTGTACCATGAGGAAATCACCTACAACACGTTTCTCAGAACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCACACCATGATATAAATTCATCACACACGATATAAAAGTTAAGGCAAGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAAGACGGTGAAACCCCATCTCTACTAAAAATACAAAAATTACCTGAGCGTGGTGGCATGCACCTGTAATTCCAGCTACTTGGGAGGCTGAAGCAGGAGAATCATTTGAACCTGGGAGGTGGAGGCTGCAGTGAGCTGAGATTGTGCCACTACACTCCAGCCTGGGCAACAGAGCAAGACTCCATCCCACACACCAAAAAAAAGTTAAAAATTTTTTATCACTGGCTCATTCTTCAAGTACATCTCTGGACTATGAATTGTAACTTAACTACTTTTCCAAGAAGTCTTGGAAGTGAGATAATTCTGTAAGTACTCTTTAAGCAGTGGTCAAAAGTTTAAAAGGTTGTGTTTTCTCATTAAATCAGTTAGTAAAACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173875:ENST00000343325:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains