Special

HsaINT0188419 @ hg38

Intron Retention

Gene
ENSG00000173875 | ZNF791
Description
zinc finger protein 791 [Source:HGNC Symbol;Acc:HGNC:26895]
Coordinates
chr19:12624650-12631921:+
Coord C1 exon
chr19:12624650-12624710
Coord A exon
chr19:12624711-12627720
Coord C2 exon
chr19:12627721-12631921
Length
3010 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTGCTTCTAATTTTTTACAGAAG
3' ss Score
8.42
Exon sequences
Seq C1 exon
GGGAAAAATGGGAAGACCCGAATGTTGAAGATCAACACAAAAACCAAGGACGAAATCTAAG
Seq A exon
GTGAGTTGCACTCACAAGAAGTAACAGTGTTCCTTGAAAGAATCTTAAAAATGTTATGGCCGGGCACGGTGGCTCACACCTGTAATCTCAGCACTTTGAGAGGCTGAGGTGGGTGGATCATGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGATGAAACCCCGTCTCTACTAAAAATACAAAAAAAGTTAGCCAGTTGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCTGGAGGCTGAGGCAGAGAATTACTTGAATCCAGGAGGCAGAGGTTGCAGCGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAGAAGTTGTGACACTTTTAAAACAAGAAGCAAGCTTAGCTCCAAATTTATTTATTTATTTGTTTTATTTATTTTTTCTTGAGATGAGGTTTTGCTCTGTCACTCAGGCTGGAGTGCAGTGGCATGGTCTTTGCTCACTGCAACCTCCACCTCCCGGGATCAAGTGATTTTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGGACGTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGCAAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCGCCTCAGCCTTCCAAAGTGCTGGGATTACAGGCACGAGCCACTGGGCCCCAAATTTATTTATTATCAGAAAATGTTTACCAAAAATGTTTTCTCAAGTGACACAGATGTCCACTGGCTGAAAAATATTATACTTGGGCCGGGCACTGTGCCTCACGCTTATAATCCCAGCACTTTGGGAAGGTGAGGTGGGCGGATCACCAGAGGTCAGGAGATCAAGACCAGTCTGGCCAACACAGTGAAAACCTGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGCACACACCTGTCATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCCAGATCGCACCACTACACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAAGAAAAATATTGTACTTGGGAACAGTTTTGTTTGTTTGTTTGTTTTGTGAAACAGAGTCTCGCTCTGTCACCCAGGCTGGAGTGGAGTGGTATGATCTTGGCTCACTGCAACCTCTAACCCCTGGGTTCAAGCAATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGATTATAAGCGCGCACTACTATACTGGGTTAATTTTTGTTTTGTTTTGTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCAGGCTAGAGTGCTGTGGCGCAATCTCGGCTCACTGCAACCTCCCACTCCCTGGTTCAAGGGATTCTTCTGCCTCCGCCTCCCAGGTAGCTGGGATTACAGGCATGCATCACCATGCCCGGCTAATTTTTGTGTTTTTAGTAGAGATAGGGTTTCACTATGTTGGCCAGGATGGTCACGATCTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCAGCCAATTTTTGTATTTTTTAGTAGAGATGGGGTTTCACTATGTTGGCCTGGATGGTCTCGATCTCCTGACCTCGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGGGTGAGCCACCATGCCCAGCCAATTTTGTATTTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCCCAATTGATCCACCCACCTCGGCCTCCCAAAGTGCTAGGACTACAGGCATGAGCCACCATGCCAAGGTGTGGAAACAGTATTTTATTTTATTTTTATTTTTATTTTTGAGACGAAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCCATCTCAGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCACCACGCCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCCTGTTAGCCAGGGTGGTCTTGATCTCCTGACCTCATGATCTGCCCGTCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCGCCCAGAAACAGTACTTTAAAGCCTCACATATAATTTCCGGAAGCCAAGGTGAGCAGATCATTTGAGCTCAGGAGTTCGAAACCAGCCTGGGCAACAAGACGAGACCCTGTCTCTACAAGAAACAGAAAATTCAGTCAGTTGTGGTGGTGCATGCCTGTAGTCCCAGCTACATGGGAGGCTGAGGTGGGAGGATTGATTGAGCCCGGGAGGTCAAGGCTGCAGTGAGCCATGATTGCATCACTGTACTCCAGTGCGGGTGACAGAGTGAGACTCTGTCTCAAAATGAAACCAAAAAAAAAAAAACCCATACCTCAATATTACTGTTTTGATAATAGCTATCAGTGACACAAGCCCTCTTGCAGAACATTGAGTATATTCGTTTTTAAACAAGTCAGACGGGGCAGAAAACTATTTCCCTGAAAATGATAAAAATTTAGTTCTGCTGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCAGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGACCAGCATGGTGAAACCACGGCTTTACTAAAAATACAAAATTAGCTGGGCGTGGTGGCGCATGCCTGTAATCCCAGCTACTTGGGAGGCCGAGGTAGGAGAATTGCTTGAAGCTGGGAGGTGGAGGTTGCAGTGAGCTGAGATCGCACCATTGCACTCCAGCCTGGGGAACAAGAACAAGACTCCGTCTCAAAAAAGAAAAAAGAACTTTAGTTCTACTACCCGATAATACATATAAAATCATTAATACACAACCAGTATTACCGTGCTTCTAATTTTTTACAG
Seq C2 exon
AAGCCATACGGGAGAGAGACTCTGTGAAGGTAAAGAAGGTAGTCAATGTGCAGAAAACTTCAGTCCCAATCTCAGTGTGACGAAGAAGACTGCCGGAGTAAAACCATATGAGTGTACTATCTGTGGAAAAGCCTTCATGCGTCTCTCATCCCTTACTAGACACATGAGGTCTCACACTGGATACGAGCTATTTGAGAAGCCATATAAATGTAAGGAGTGTGAGAAAGCCTTTAGTTATCTCAAATCCTTTCAAAGACATGAAAGGAGTCACACTGGAGAAAAACCCTATAAATGTAAACAATGTGGAAAAACCTTCATATATCACCAGCCCTTTCAAAGACATGAGCGGACTCACATTGGAGAAAAACCCTATGAATGTAAGCAATGTGGAAAAGCTCTTAGTTGTTCCAGTTCGCTTCGAGTTCATGAAAGGATTCACACTGGAGAAAAGCCCTATGAATGTAAACAATGTGGGAAAGCCTTCAGTTGTTCCAGTTCTATTCGAGTACACGAAAGAACTCACACTGGAGAGAAACCCTATGCATGTAAGGAATGTGGGAAAGCCTTCATTTCCCACACAAGTGTTCTAACACACATGATAACACACAACGGAGATAGACCTTATAAATGCAAAGAATGTGGAAAGGCATTCATTTTTCCCAGTTTTTTACGAGTACATGAAAGAATTCACACTGGAGAGAAACCCTATAAATGTAAACAATGTGGTAAAGCCTTCAGATGTTCCACCTCCATTCAAATTCATGAAAGAATTCATACTGGAGAGAAGCCCTATAAATGTAAAGAATGTGGGAAATCTTTCAGTGCACGCCCAGCCTTTCGAGTACACGTGAGAGTGCATACTGGAGAGAAACCCTATAAGTGTAAAGAATGTGGGAAAGCCTTTAGTAGAATCAGTTACTTTCGAATACATGAAAGGACTCACACTGGAGAGAAACCCTACGAATGTAAAAAATGTGGGAAAACTTTCAATTATCCTCTAGATTTGAAAATCCACAAGAGAAATCACACTGGAGAAAAACCCTATGAGTGTAAGGAATGTGCAAAAACCTTCATTTCTCTTGAGAACTTTCGAAGACACATGATCACCCACACTGGAGACGGACCTTATAAATGTAGGGACTGTGGGAAGGTGTTCATTTTTCCTAGTGCGTTACGAACACATGAAAGAACTCACACTGGAGAGAAACCCTATGAATGTAAACAATGTGGAAAAGCCTTTAGTTGTTCTAGTTACATTCGGATACATAAAAGAACTCACACTGGGGAGAAACCTTATGAATGTAAGGAATGCGGGAAGGCCTTTATTTATCCCACAAGCTTTCAAGGACACATGAGAATGCATACTGGAGAGAAACCCTATAAATGTAAAGAATGTGGGAAGGCCTTTAGTCTTCACAGTTCCTTTCAAAGACATACAAGAATTCACAATTATGAGAAACCTCTTGAATGTAAGCAATGTGGAAAAGCCTTCAGTGTGTCCACATCCTTAAAAAAACATATGAGAATGCACAATCGATAGAAACTCTATAAATGTGAGAAATAGGAGAAAGTTTTCAATTCTAACAGATGCTTTCAAAGTTGTGAAAATTCCCACTGAAGAGAGAAATCCTGTCAATGTAAGTAATATAGAAAGCGAGATACAAGATGATTCATGTATAGTCAGGTACCACATAATCATGTTTCAGTCAGCAATGGACCATATAGGTTGGTAGCCCCATAAGATTATATAACACCTAAAACATTTCTATCAACCGCAATTTAGTAGCAGTAGTAACACCATAGTGCAGCACATTATTTAAGTGTTTATGGTGCTGGTGTAAACGTGCTGCACTTTCAGTTGTATAAAAGTACAAGACAGCGGCCGGGGACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGCCAGGAGATCAAGACCATCCTGGCTAACACGGTAAAACCCCATCTCTACTAAAAATACAAACAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATAAACCCAGGAGGCCGAGCTGACAGTGAGCTGAGATCCGGCCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAGTACAACACAGCTGGGCATGGTCACACCTGTGATCCCAACACTGGGAGACTAAGGCAGTAGGATTGCTTGATGCCAGGACTACTCTGGTCAACCTAGTGAGACCCTGTCTCTACAAAAAATAAAAACATTTTCTAAGTGTGGTAGCACACCCTGTAGTCCCATCTACATGGGAGGCTGAGGCAGGAGGATTGCCTGAGCCCAGGAGTTCAAGGCTACAGTGAACCAAGATCACGTGATGGCAGTCCAGCATGGGTGACAGTGAGACTGTATCAAAAAAAAAAAAAAAAAATTGGCTGGGCACAGTGGCTCATACCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGAGAATCAGTTGAGGTCAGGAGTTCAAGACCAGCCTGGTCAACATGATGAAACCCTGTCTCCATTAGAAATACGAAAATTAGCTGGGCGTTCTGGTGTGCCTGTAGTCCCAGCTACTTGGGAGGCCAAAGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGATTGCAGTGAGCTGAGATCTACCACTACACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCGAAAAAAAAAAAATTACAGCACAGATGTGCAATATATACTTGATAATAAATGGCTAAGTTACTGGTTTATATATTTACAATCCTGTTTTAGAATGTATTCCTGTGTTTTTTTAACAGTAAGACAGTCTCAGGCAGGTCCTTAAGGAGATATTCCCGGAAAAACTTTGTTATGATAGGCGATGACGGCTCCATGTGCAGGACTGCCCCTGAACGTATTCTGGCGGGACAAAACATGGAGGCAGAAGACAATGATATTGATGATCCTCACCCCGTGTAGTCCTACACTAATGTGTGTTTGTGTCTTAGTTAGTCTTTAACAAAAATAGTTTAAAAAAATTTAATAGAAAAAGCTTATAGAATATGGACATAAAATATTTTTGTACAGCTGTACAATGTGTTTTAAGCTAAATTATTACAAAGTTTTTAAAAATAAGTTTATAAAGAAAATAATGTACAGTAAGTTAAGGTTTATTCATTATTGAGGAAAAAATGTTTTTATGAATGTAGTGTAGTCCAAGTGTACAGTGTTTATAAATTCTCCATTAGTGTACAGTAACATCCTGGGCCTTCGCATTCACTCACCACTCAACTGACTCACCCAGAGCAACTTCTAGTCCTGCAAGCTATGTTCATGGAGTGTCCTATGCAGGTGCATCCTTTTTTATCTTTTATACTGCATGTTTACTCTGTGTATTTTCTGTGTTTAGACTCATAAATACTTAACATTTTGTTACAATTTCCTACAGTGTTCAGTACAACAACATGTTGTATGGTTTATAGCCTAGTAGCAATAGACTGTACCATATAGTCTAGATGTGTTGTAGCTATACCATCTAGATTTGTGTAAGTTCACTTTGTGATGTTTGTACCATGAGGAAATCACCTACAACACGTTTCTCAGAACATATACCCATGATTAAGCAATCTCTGCCTGTAAAATGCTCCAGAAAATTCACACCATGATATAAATTCATCACACACGATATAAAAGTTAAGGCAAGGCATGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAAGACGGTGAAACCCCATCTCTACTAAAAATACAAAAATTACCTGAGCGTGGTGGCATGCACCTGTAATTCCAGCTACTTGGGAGGCTGAAGCAGGAGAATCATTTGAACCTGGGAGGTGGAGGCTGCAGTGAGCTGAGATTGTGCCACTACACTCCAGCCTGGGCAACAGAGCAAGACTCCATCCCACACACCAAAAAAAAGTTAAAAATTTTTTATCACTGGCTCATTCTTCAAGTACATCTCTGGACTATGAATTGTAACTTAACTACTTTTCCAAGAAGTCTTGGAAGTGAGATAATTCTGTAAGTACTCTTTAAGCAGTGGTCAAAAGTTTAAAAGGTTGTGTTTTCTCATTAAATCAGTTAGTAAAACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173875:ENST00000343325:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.810 A=NA C2=0.025
Domain overlap (PFAM):

C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.1)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains