RnoINT0168658 @ rn6
Intron Retention
Gene
ENSRNOG00000023920 | Zfp791
Description
zinc finger protein 791 [Source:MGI Symbol;Acc:MGI:3648473]
Coordinates
chr19:26237514-26243223:-
Coord C1 exon
chr19:26243135-26243223
Coord A exon
chr19:26239334-26243134
Coord C2 exon
chr19:26237514-26239333
Length
3801 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCTGATTTTTCTTTTTGCAGAAG
3' ss Score
9.71
Exon sequences
Seq C1 exon
GTAATGGTTTTACGGGTTTACATTTTAGGGGGTGAATTGGAAGACGAGGATGTTACAAATCAGTACAGAATCCAAGAGGAAAATGTAAG
Seq A exon
GTGAGTTTACACACTAAAGAAAGCAGAATCTTACTACATGTTACATTTTTAAATTAGGCAACCAAAAGAAACTTGTATATGGTTTTCTTTAAAAAAATGGTTTTTGTCAAAATAGTTTAAATGACACAGATACTGAACGTTTAAACATTTTATTAGATAGGGTAGTTGTCTTAGGTTTTATTGCCTGTGAGGAGACACCATAACCAAGGCAACTCTTTTTTTTTTTTTTTTTTTTTTTTTCGGACCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCGCTACCACTGAGCTAAATCCCAAACCCCTATTTATTTATTTTTATGTACAGCATTCTGTCTGTATATATGACTGCAGGCCAGAAGAGGACACCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATAACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAACCAAGGCAACTCTTATAAAGGCCAACATTTAATTGGGGCTGGCTTACAATTTCAGAGGTTCAGTCCATTATCATCATGGTTGGAAGCATGGCGGCCTCCAGGCAGACATGGTGCTGAAGGAGCTAGGAGTTCTCCATCTTGATCCAAAGGCAGCCAGGAGGAGACTATCTTTTACACTGGCAGAGCCTGACAGAACTCTGAGCCTACCACACAGTGACACAGTTCCTCCAGCAAGGCCACACCTCCTAATAGTGCCACTCCCAATGGCCAAGCAATTCAAACACATGAATTTAGACAGGCCAAACCTATGCTCTGGAAACCTCACAGTCATACTGATCAGATTTGAGAGAGGGAGACCGCCTGAAGAACTAGATTCAAGAGAATCAAACAGAAAGATATCTCTATTCTAAACTTTTGTCTTGAGAAGTATATTTTACAGAATGTACCTACTTGGATTCCTGGTCTCAAAGACTTTCAGCTGGGTCCAGTCAAGACACACATCCAGCTACAACATTTATTTCATTCTTCCTACCCCTACCCCCAAGGATATTTCAATGCCCATGTACAGCTTGAAGAAGTTATAGGAGAGTCGTCGCCCCAATTCCCTGGACTTTTGGGGGGCTGAAAGTGATTATTCTAAGGTTGTTTTTATGAGGAATTTAGAAGTGGTTGTAATTTAACAGGGAGGAATTAGCTAGATTGAATTGTACAGCCATAATCTCATTTGGTAACTAAGCTAAAATCATATCTTTGCTTTGGTATAGAATTTATTTGTTAAAAAAGTTTAAAAATACAAGGTTTAGAGACAGTCCTTCTATTGTTACTGTTACAAACTTCTGAGTTGATTATACATGTGAGTTAAGGGCCAAATAGCAAATTCATGGCTCATTTGTTAGAATACTTTCACGATAGTTAACAGACAATCCAGATTACAGTCCAGATAGATGGTTTTCAAAAACATCAGAACTCCACAAAATATGAAAAGTAAAGTTATTTATCTTTTGTTGAGACATATCTGCTCCTAACAGTTCCCCTTTGGTGGATTTAACGAAGAAATTGAGCATCTCTTCCTCCAGGAAAGGCAATACTTTGTGGCTAGGCAACCACTGGGCAGAAACTGCCTGTTTCATCTGCAGACTAATACTGTCCAAAAAGGAACACCTTATGCAGAAGAGTTGTTGACTGATAATCTCTACCGAGCCAGAGTTATCAGCCCTTTGAGGTTTCTGCGTTTCAGAGTCTACCAGTTGGTTTGGGGCCAGAAGGCTGAAGACTTGCACTGACATATTGCTAACAGGGGACTGGGCTAGTGGAGATTTGTCTCTACAACCTCTCAGTTCTGGAAGCCGTGTTAGGCTTCCTATGTGTATAGATATTTGGTCATTCTCAGATTTCTGACGGGGTTAAAGACTGATTATAGTCTTATAGCCTATCAGGCTGTTTAACTCTGAAAATACATATTTTATTAGATAGTTATCAGATAGTATACAAGCTAGCCAGGATATAACACAGATTTTAAGCCTTTCTTAAGCTGGAATGAATAACTAAATGTTTAACTGATAAAATGTTGGACTGGGTGTTAGCTATATTTTATGCTTTTAATTACAAAATGATAATAATTGTGCTCAGCTTATATTTGAGAGAAAAGGTTTTGTTTTAATTAGACAGAAAGGGGGAAGTGTAGGATGATGTCATCAAGCAGGTGTAGGCAGGTACAAGATAGAACGAGGCCTGTCAATGGACGAGAAGGAAGGATGGGCGGGAGAAAAGTTTTAGAGAGGAGGAGACTGGAGCAAGGCAGAAGCAGCAGCAGAGAGAACATGGAGGCCAATGTTAAGATTCCTCTCTGCAAGGGGNNTNNNNNNNNNNNNNNTNNNNNNNNNNNNNNTTCTTNNNNNCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAGAAAAAAGAGAAAAAAAAAAAGATTCCTCTCTGCACATTTACAGGTTGTTATGAATGTTCTTAAGGGATGGATGTGCACAGGGCTTTGTTTGTCTAGATCAGCAAATTATGTATTATCAGTTGGATCAGAGGTTATTGTGTTGTGTGTTCTTTCATGTGGTGATTTAAGTTTAAGAGAGTGTGTGGTGACTGGAGACACTGGGCCGCCACAGAATTGGGATGTATATTTCTGGCATGGTGGCAGCCTGCCTTGGGAACTGGATGGGTAGAGAGGTTGTTGCCAGGCTCAGAGAGAAGCCGTCAGCAGTGTGATATGAGATGGAGCAGAGCAGCTGTGTTATATCCTGGCTAGCTTGTATACCTTTGCTGACTGAGATGGAGATATCTATGAGATATCTTGGGGCACTGTGGTGCCAGATCCAGTGCAGGGTAAAAGACAGCATTTATTATAATTTTACACCAACACACATGTGATCCGAACACTTTGAAGACAAAGGCAGAGGCAGGAGGATCATAGTAAATTAAAGGCAGGAGGGGGGACATCCTGAGTTCAAAGCCAACCTGGTCTATATAGTGAATAAAGGTCAGCCAAGGTTACATAATAAAACTCAAAAAAAAATGTTTTTTAACTTGGAAACAGCATTAAGAAACCTCATATAACCTGGGTGGTTGTGGTGGTGCAACCCTTTAATCCCAGCACTCAAGAGGTGGCAGAGGCAGGTGGATCTCTGAGTTCGAGACCAGTCTGGACTACAGATGACTTCCAGGACTGCCAGGCCTACACAGAGAAACCCCATATGGAAAAACAACCCTGTATATTGATAATACTCTGTTATTGTACTTTTTGATTGTTTGGGTGTTATTATAATTATGTGTGTTTATGTATGTGTCTATCTGCTTGAATTTATGTGTACCACACGCATGCAGGAGTTCCTAGGGACCAGAAGAGGCAATCAGATGCCCTGGAACTAGAATTACAGGTGATTCTGAGCCACCATGGGGGTACAAACCTAGGCAAGCAGTAAGTGCTCTTAACCTTTGCCATTTCTCTGGGCCCTGGTTTGATGTTTTGAGACAGGAGTCTACCATAGAGCCCTAGATAACCACAAACTCCTAACAGTCCTCCTGCCTCAGCTTTCCAAATGCTGGGCTTTCAGGCATGCAGTACCGGCCTGGCTTTTGCTTTTATTTTGAGGTAGAACCTTGCTTTATAACACTAACTGCCCTCACATTTGTGATCCTCCTGCCTCAGCCTCCCAAGTGCCAGGAGGTACACCACCATATCCTGGCTATAAAAATGTAATTCTGGTGTGTATCAGTGAACATTAAATGGTAAACAACTATTAATAATGTTATTCTGATTTTTCTTTTTGCAG
Seq C2 exon
AAGTTATATGATACAAAGACTCTATGAAAGTAAAGAGGTTACTCAGCATAGAGAAAGCTTCAGCCAGATTCCAAACACTGGCGTGACCAAGATAACTGCTGGAGGAAAACCATATAATTGTAGTGTATGTGGAAAAGGCTTCATGCTTTGTTCTTCCCTCACTAGACATGTCAGATCTCACCCTGGGCATGAGCTTGACGGGTTTAAGTGTGGAGAGAAGAGATATAAATGTAAGGAATGTGGGGCCACCTTCAGTTACCTCAAATCCTTTCAGAGACATGAAAGGACTCACGCTGGAGAAAACCCCTACAGGTGTAAGCACTGTGGGAAGACCTTCATCTATTACCAGCCCTTTCAAACACATGAACGGACACACATTGGAGAGAGAATCTATCAGTGCAAGCATTGTGGTAAAGTGCTCAGCTCTCCTGGTTCTCTTAGAATTCATGAAAGAATTCACACTGGGGAGAGGCCCTACGTGTGTGAGAAGTGTGGGAAGGCCTTCAGTTGTCCCAGTTCCATCCAAATCCACGGAAGAACCCACACTGGGGAGAGGCCCTATGAATGTAAAGAATGTGGGAAAGCCTTCATCTCCCGCACGAGTGTTAAAACGCACATGGTAACACACAGTGGTGACGCACACAAGCCTCACAAATGCAAGGATTGTGGGAAGGCATTCCTTCGGCCATGTTTCCTCCGAGTGCATGCTCGAATTCACACCGGAGAGAAGCCATACGTTTGCAAGCAATGTGGTAAAGCTTTTAGATGTTCCACTTCGATTCAGATTCATAAAAGGACTCACACCGGAGAGAAACCCTACACGTGTAAGGAGTGTGGTAAAGCTTTCAGTGCCCATTCAGCATTTCGAGTCCACAGGCGGGTGCACACTGGAGAGAAACCTTACAAATGCAGAGACTGTGGGAAAGCCTTCATCTGTCTCACATACTGTCGTATGCATGAGAGAAAACACACCAGAGAGAAACCCTATGAATGTCAGCAGTGTGGCAAAGCCTTCATTTCTCTTGAAAACTTTCAACGGCACGTCAAGACACACACGGAAGACATACCTTATAAATGTAAGGAATGTGGAAAAGCTTTCGTTTTCCTCAGCGCACTTCGAGCCCATGAAAGGATTCACACTGGAGAGAAGCCTTATGAGTGTAAGCAATGTGGCAAAACCTTTAGATGTTCAAGTTATGTTCAGGTACACAGGAGGATCCACACCGGTGAGAAACCCTATGAATGCAAGGAGTGTGGAAAAACCTTCATTTATTCTACAAGCTTTCGAGGACACATGAGAATGCACACGGGAGAGAAACCCTATAAATGTAAGGAGTGTGAGAAAGCCTTCAGGCTTGGGAGTTCCCTCAAAAGACATGAAAGAACTCACAGTGGGAAGAAATGTGTTTAGTGTACACGTTACGGGAGAACATTTTGCTTTGTCCATATCTTCAATAAACGTGAAAATGCACAATGGACAACGAGTGTGAGGAATGGGGAACAAAAGTTTCCAATTTTAACAAAAATGTCCATTGTGGAGAAATCTCAAGCTATTAATTAAGAAGTTAAGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCGCCCGACTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGATCTGATGCCCTCTTCTGGTGTATCTGAAGACAGCTACAGTGTACTTATATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAAAAAAAAAATTAAGAAGTTAATACAGGAAACTAACTGCAGTGGAACAGGGAACTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023920:ENSRNOT00000037766:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.3),PF046067=Ogr_Delta=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]