HsaINT0187263 @ hg19
Intron Retention
Gene
ENSG00000197044 | ZNF441
Description
zinc finger protein 441 [Source:HGNC Symbol;Acc:20875]
Coordinates
chr19:11888426-11889208:+
Coord C1 exon
chr19:11888426-11888552
Coord A exon
chr19:11888553-11889144
Coord C2 exon
chr19:11889145-11889208
Length
592 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TTTCTGGTTCTAACTTTTAGGAA
3' ss Score
10.14
Exon sequences
Seq C1 exon
GACTCAGTGGCATTTGAGGATGTGGCTATAAACTTCACCTGTGAGGAGTGGGCTTTGCTGGGTCCATCACAGAAGAGTCTCTACAGAGATGTGATGCAGGAAACCATCAGAAACCTGGACTGTATAG
Seq A exon
GTAAGGATGTCATCATGTCTTCACTTAGTCAATTAGAGACATTTGTTTCTTGGTCATCAATGCTGTTCAATTATTTGAAATATGGAAGGGTATATAATTGGCCCTTGAACCAGCCACCCAAGCAGTCATACATCTTCTCCCGCACAACTTAACCACTAGTAGCCTACTGTTTACTGGCAGCATTACTGGTAACATAAACAGTTGATTAATACATGTATTATATGTCATATGTATTACATGCTATATATTCTCACAGGAAAGTAAGCTAGAAAAGGAAAATATTCATTAGGAAACCATAGGTAAGTGGAACATTATTTAGTATTCATAGAAAATACAACATTACAAAGTTTTCATTCTGATTGTCTTTACATTGAGTAGACTGAATAAGAGGAGGGGTTGGTCTTGCTGTCTCAAGAGTAGCAGAGACTGAAGAAATTCATATGTAAGTAGACCTGTGCAGTTCAAACCTGTGTTGAAGACTCAGCTGTAGTTTGGTGTGTGAATCATGCATGATTGTAGTGTACATAAAATCTTACAGTCTTTCTATAATTTTATAATAATTTATAGTCATTTTTCTGGTTCTAACTTTTAG
Seq C2 exon
GAATGATATGGCAAAATCATGATATAGAAGAAGATCAGTACAAAGATCTCAGAAGAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197044-ZNF441:NM_152355:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCATTTGAGGATGTGGC
R:
GATTTCTTCTGAGATCTTTGTACTGA
Band lengths:
182-774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)