BtaINT0004722 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BGT4]
Coordinates
chr7:14307691-14308078:+
Coord C1 exon
chr7:14307691-14307817
Coord A exon
chr7:14307818-14308017
Coord C2 exon
chr7:14308018-14308078
Length
200 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
AATTTTTATGTGTATTTTAGGAA
3' ss Score
10.01
Exon sequences
Seq C1 exon
GACTCAGTGGTCTTTGAGGATGTGACTGTGAACTTCACCCTGGAAGAGTGGGCTTTACTGGATTTTTCACAGAAGAAACTCTACCGAGATGTGATGGGAGAAACCTTTAGGAACCTGGCCTCAGTAG
Seq A exon
GTAAGGATGACAACTGACCTTCACCTTGTCAAAGGACAAGTTTTTCTGCCCATCAGTATTTTTCTAAGAGGTGGAACGTGTAAAGGGAGGACATTGGTAAATAAAAAAATTAGGTATTGTCACAGCTCATTGTAGAACTAGAGTCTACTGATTTTTCTATAACTTCTAATACTTTGGAATAATTTTTATGTGTATTTTAG
Seq C2 exon
GAACAACATGGGAAGATCATGACACTGAAGATCAGTACAGAAATCAGGGGAGAAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021529:ENSBTAT00000053377:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.810
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCAGTGGTCTTTGAGGATGT
R:
CTTAGTTTTCTCCCCTGATTTCTGT
Band lengths:
188-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]