HsaINT0188479 @ hg19
Intron Retention
Gene
ENSG00000197933 | ZNF823
Description
zinc finger protein 823 [Source:HGNC Symbol;Acc:30936]
Coordinates
chr19:11835009-11836142:-
Coord C1 exon
chr19:11836016-11836142
Coord A exon
chr19:11835070-11836015
Coord C2 exon
chr19:11835009-11835069
Length
946 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TTCCTGGGTCTACCTTTTAGAAA
3' ss Score
6.91
Exon sequences
Seq C1 exon
GACTCAGTGGCCTTTGAAGATGTGGCTGTGAACTTCACACAAGAGGAGTGGGCTTTGCTGGGTCCATCACAGAAGAGTCTCTACAGAAATGTCATGCAGGAAACCATTAGGAACCTGGACTGTATAG
Seq A exon
GTAAGGATGACATCATCTCTTCACTTAGTCAATTAGAGACATTTGTTTCCTGGCCATCAACGCTGTTCATGATTTGAAATATGGAAAGAGGATATGGTTGACCCTTGAACAACACAGGGTTTAGAGGTGTCAGCCCCTCAAACAGTCTTACATCCTCTAATAACTTTTTTTGTCCCCCGCAACTTAACCACTAATAACCTATTGTTGACTGGCCCACTTATGGATAACATAAACATTAGATTAATCCATATATTGTATGTCATATGTATTACATACTGTACTGTCACAGTAAAGTGGGCTTGGGAAGGAAAATGTTGATGAGAATCATAAGAAGAGAAACTGGCCGGGTGCGGTGACTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGAAGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAACACAAAAAAAATTAGCCGGGCGTGATGGCGGACACCTGTAGCCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGACGTGAACCTGGGAGGCAGAGTTTGCAGTGAGCTGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGGGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAGATGAGAAACTATATTTACTATTCATTAAGTGGAAGTAGATCTTCATAAAGGTTTTCACCCTTGTTGTCTTCACACTGAGTGGGCTGAGGAAGGGGAGGGGTTGGTCTTGCTGTCCCAGGGGTAGCAGAGACTGAAGAACATTCATGTATGAGTGGAGCTGTGCAGTTCAAACCTGTGTTGTTGAAGAGTCACATGTACTTTGGTGAATGAATCATGCATGATTGCAGTACGCGTAAAATCTTAGAGTTTTTCTATAATTTTGTAAACATTTTTAGTGATTTTCCTGGGTCTACCTTTTAG
Seq C2 exon
AAATGAAATGGGAGGACCAGAACATTGGAGATCAGTGCCAAAATGCCAAGAGAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197933-ZNF823:NM_001080493:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.171
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGCCTTTGAAGATGTGG
R:
AGATTTCTCTTGGCATTTTGGC
Band lengths:
182-1128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)