GgaINT0070519 @ galGal4
Intron Retention
Gene
ENSGALG00000006929 | ZNF6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHJ7]
Coordinates
chr4:8661769-8664104:-
Coord C1 exon
chr4:8663967-8664104
Coord A exon
chr4:8661913-8663966
Coord C2 exon
chr4:8661769-8661912
Length
2054 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
3' ss Seq
TGTCTAATTTTTGTTTCTAGGGA
3' ss Score
10.29
Exon sequences
Seq C1 exon
GCTGTGCTGAAATAGCAGATGAAGTTTACATGGAAGTTATTGTAGGTGAAGAAGAAGCTACATCACTTCCAGACACACAGCTCGAAGAGACTGGTGTGAATAAAACTTTTGTTCCTGTTGCTTGGGCTGCTGCTTACG
Seq A exon
GTAGGAATCTCTATGCTTATTTTTTGAAAATCACTTTCATTATTTTTTTCCCAGTCTGACTTCCAGAATCTGCGTGCAAATGTCACCGTTGGGTGGGGGTCTGGGGGCAGCTCCTTCAGGTCTTTTAGCAGTGTCAGTCAGTGGATAATATAAATAATATATAATAAAACGCTTGAAAAGTTCTTTTCCACAGAATTCACAGCCTTTCACATGTGAAGTCCTTGGCTTTTTGCAATTTGGATAGGAAAAAAAAAAACAATCTCATTTTTGTAGTGTTTTTGTTTTTCTTCTCAATGTTAGCCTGCCTAGCAGTTCTCATATTATTGTACTAGTTGGCTGTCTTGCGTGTAATGAATGGATCGCTATATGTTGAGTTATATGAAATAGGAAGGAAAGCTGTTTGGAGAACTTTGATACCCTTGTTCTTAATACCAGCTCACTTGCACAGAGCGTGTGGGTTTTTTGATCATCAGCGAAGTCATCTGTTAAGGATTTTACAAAAGCAAGAATAACATAAAGTATTTTATATTCACTAGGAGAAAGGGGAAGTACCTTTAAAAAATAGAAGAGATGTGTAAATTCATCCCTGATAAGTTCTGTTTATGTAGCATGTTTTAAACCTGCTAGGCCTTTAGATCATAGATGAATATATAAATAAATGAATATATAAATAAATACATCTTCTGCAGCCATGTTTCAAATTGTAGAAGTAACAGGATATATTGCAAATTCTGAATATTCTCTTATTTCAGATTTGTTCTTTTCTAGGATTTTGGCATGTTAAATTTATATTAAGAGTATCAGATCATCAATGGCTTATAATTAAGTAAGGAAATTAGATGGTTTAGATTCAGTGACATTCTATTTCTGAGCACAATGGCTGGGCTTGATGAGGTGGTTGCAAAGCACCAGGCTTTGGCATGTAGCAGTAAACACTTTCAATCCAAAATGAGGAATACACTCTTAGTATTACTTCTCCATCTCATAGAATAGGAGAGCGGAATGGCTGGTAGGGTGGAAGTCCTTTTATCTGCCAAGTTACTCCATAAGGACAAAGTACTTTGATCTCAGAAATTGTGGATTTCAGGTCCCCCCATTTCTAGATGGACATGAGGTTTTTTATAAGGTTAGAACTTTCCAGAAACAAGCTTATTACTAGTGAGAGGCAGGAAAGACAGCATAGTAAGCATGCAAGCACATCTTCAGCGATGTGTACTTTTATTGTGTACATTTAAGTACTGACAAAGATGCGATCTTTATTTCCTAGTGCACATAATTGCAAAATACTGAACTGATGTGAACTGCACGGCTCACTTTGAACAGTATTGAGCTGTTACTTACTACTTGAGTTAGTTTTCTCTCATTCTTGGACTTTCAAAACCATCATCTTTAAAAAGAACTTTAATTTATAATGACTAAAATACCATTTTCTGCAGGAGATGACAGAAGACTACCCAGAAGATATGAAGATGGTCAAGCGGCAGGTAAGGGCATGCAGATATGCTGTGTAGAGCTTTACAAGTAACTTAGTGTCTTTCAAACAGTATATATTAATTTGTGATAGTTCTCCTGATCAGAGAGTGCAAAAAATTGCCTATAAAGCATAAGCTGAAGATCTGCATAGTATTTCTCTTCTATTTTGAAATGAAAACAATTATGTAAGTGTTGTGGGCCTTCAAATTGGGTGGGGAAGTCATTGGTTGTGTATAGTTTTGTAATCAGAGCAAAGATAATGCAGTTGCTAGGAAGTAAAATCAAGTTAAATAGGTAAGAGAAAGTAACCAGCATAACCTGTCAGAAATCAAGATTCTGAGAATCCAAGATAGCAAAAAACGTACTTGAAAGTTAATAATTGTTCGAACGGTTAAGTTCTTGAGTTTGGCCAACAACAAAGGCAGTGCTTTGTATTGGCACTTTTTAAAAACATGTTCATTGTAGAGGAATGGGTGATCTGTTTTGTTTTAAAGTAGACATGTTGCTGTGCAATTCCAGTCATCAGTCCCAAAGAAAATAATTGTTTAAGATTTTTTATGGTGTCTAATTTTTGTTTCTAG
Seq C2 exon
GGAATAACTTGGATACACGATTAGAAAACAAAAACGGTAATGCAACACAATACCTGCAGATTTGTGATAGCATTAGCACTAATAGAGTGCTAAAACAAAAAACCAAGAAAAGGAGGAGAGGAGAGGCCAGGCAATGGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929:ENSGALT00000011226:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.347
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(13.7=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(13.7=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]