HsaINT0188219 @ hg38
Intron Retention
Gene
ENSG00000147180 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
Coordinates
chrX:85268294-85270146:+
Coord C1 exon
chrX:85268294-85268341
Coord A exon
chrX:85268342-85270002
Coord C2 exon
chrX:85270003-85270146
Length
1661 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTTTCAATTTTTTTTTCCAGGAA
3' ss Score
10.59
Exon sequences
Seq C1 exon
GAGATGAAAGAAGAGTTTCCCGAAGGTATGAAGATTGTCAAGCATCAG
Seq A exon
GTAAGAGAGCATTGTATATGAGATGTGAGTTAAAGTTCTGGCTTTATTTTATTTTACTGCTTGGTAAGTAACAAGTTTGTGTCTACAGACACATTTGTTGGACTCTTACTTGCTTAGTCATACCTAATCTAGTTAGTTAGGAGTTTCTTCTTTGAGGAATTAATTTATGTGTGGACATAATGTGTGTTAATCTGTAAATGCAGTTCCATTTAGATTTCCCTCAAACTTTAAGCATCAGGCAGTTTATCAAATGGACCATAACAGGTTGCTATGGAAAAAATGAAATAAGAAATTATTTGGACAGAAAAGTAAAAATTATTCATGATATCAACCCCTTGTTAATGTTCTTTTTGGGGCAGAACTGTTTTCTTAATTTCTATGGCAACCAGTGCATTTATATATAACTGTTATATAAAACCCATGTGTCAGCTTAATTTTTTTTAGTTTTAATACACTCTATATGGTGTTGTTCTCTAGTTGATCTTCTTGTTAAGTTTTCTTAAGCAAGGAGATATTTTCTTATGATAATGTGTCATTGTTCTGTTTCTACCCTTGGGAAGTATTTGACTCTCTAAACTTAGGTGTTGATTTCGAGAAATTGATGAGAAGTATAGATCACAGCATGTAAGTTAACCTGACAGTTTTGTAGGTCTACATTTTTTAGCTAAATTGCATAAAACCACAATGGATTTTTGATAACTAGGATTTTATTAAGTACTTTTTAATGTATGCACTGATCACACTGAAATTGCAATAAATTGCCTACCATATGTTAACCCGTAAAATCAATCTTAATATGTAGTACTCTTTATATCAAGTACACTATTCTGAAGCATATCTGCAAGAGATCTGTTTCGTTTTTTATGCATTACACTTAGTCACCATAACTATAATGGTTCAGTAATATGTCTACATTTCTTTTTCAATTAATTTCATCAGCCTTCATTGGTAAAAAAAAATTGGTCTGATGCCAAGATTTTGTTTCAAATTCAGTTTCTTTTCTTTCTTTTTTTTCTTTTTCTTTCTTTCTTTCTTTTTTCTTTTTTTTTTTCAAGAGACAGGGTCTTCTTGCTCTGTTACCGAGACTGGTGTGCAGTAGCACAATCATAGCTCACTGCAACCTTGAACTCCTGGGCTCAAGCAATCCTCCCATCTCAGGCTCCTGAGTAGCTGGGACTACAGGTGCATGCCACCATGCCTGACCAATTTGTTTTTTGTAGAGACAGGATCTTATTATGTTGCCTAGGGTGGACTGAAACTCCTGACCTCAAGCAGTCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGGGCCATCATGCCCACCCCAAATCCACTTTCTTATATTACATTCATCTTATCAGTTTATTCCTGATAAAATAGAGATATTTTAAATTTAATTGATGATCAAATTGAGATATTTTAAAGTTAATTTCACATGATATCCTATTCAAAGTATTTACAAATACATGTCTTTACTTGTGAGTGAGAGAGAACAAGAGTGAGAGAGAGAAAGAGAATCATAAGATGGATATACTTTGTGAAATTTACTACCAGAGTGGTAACTTGGTGTCATGTCATCTGTAGTAACTCATTCAACAGAACCAAAAAAGTATAAATGTATGTGATTTAATGATGTTTCAATTTTTTTTTCCAG
Seq C2 exon
GAAATACTTTGGACTCAGCATTAGAAAGCAGAAGTAGTACAGCAGCACAGTACCTTCAAATTTGTGACGGCATTAATACAAATAAAGTACTTAAACAAAAAGCCAAAAAGAGGAGAAGGGGAGAAACCAGGCAGTGGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147180:ENST00000373165:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=NA C2=0.412
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(5.2=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(15.1=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGAAAGAAGAGTTTCCCGA
R:
GTTTGCCACTGCCTGGTTTCT
Band lengths:
190-1851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains