RnoINT0168625 @ rn6
Intron Retention
Gene
ENSRNOG00000022391 | Zfp711
Description
zinc finger protein 711 [Source:RGD Symbol;Acc:1562768]
Coordinates
chrX:84090238-84092676:+
Coord C1 exon
chrX:84090238-84090282
Coord A exon
chrX:84090283-84092532
Coord C2 exon
chrX:84092533-84092676
Length
2250 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTCTTTCTTTTTGTTATCAGGAA
3' ss Score
9.64
Exon sequences
Seq C1 exon
ATGAAAGACGAGTTTCCCGAAGATATGAAGATTGTCAAGCCACAG
Seq A exon
GTGAGAGAGCATGTGTAGGAGACATAAATGTACTGCCTGACGAGTAACACTAGTTAGATTGTGACTCTACACAAATTTATTGACTTCACCTATTATACAACTTATATAGGAGTTTGCCTCTCTTTAATAACCAACATACATATGTATTAATTAGACAATTTACCACATGGGTGGCAATAAAAGGTTGTTATTAAAAAATATACAAATTACTTGAAGAGGAAAAGAACAAGTGTTCATATCAACCATTTACTAATGTCATTCTTGGAGAAAAGTGTCTTCTTAATTTCCATGACAAACATAATATGTATATATCACAAATTCATGTCCCAGCTTAGTAACACTTTAAGTTTAATACACTTTAGTGTTGTTCCAATATAGATTGATTTATTTTCCTTAAAGGAGACTTTTCTCATGACAAAGTCTGTAATTATTGTTTCTTCCATTGGGTAGTTTGACTCTAAACTTAAATGTAGGTTTAATATAAATAAAAAGATGTACATCAGAGCATATATGCTAGGCTGACAGTTTTGTAGATTTAAAATATTAATGTGTCTTAGTTCCTGTTCTATTGCTGTGAAGAGTGATGATCAAGGTAATTCTTCTTTTCTAAAGATTTATTTATTTTATGTATATGAGTACACTGTAGTTGTCTTCAGACACACCAGAAGAGGACATCAGATCTTATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGCCCTCTGGAAGAGCAGTCAGTGTTCTTAACTGCTGAGCCATCTCTCCAGCCTTGATAAGGCAATTGTTATTAAAGAATTGTTTATGGTTTCAGAGGCTTAGTCCATTATCATCAAGGCAGGAAACATGACAGCAGGCAAATAGGCAAGCAAGCTTGGAAATGACAACTTATATCCTGATCTACAAGCAGGCAGGTGAGCAGAGAGAAACTGCCCATAGTGTGGGGATTTGAAACCTCAAAGCCCACTTCTACATTCTCCTATAAGGCCACACTGCTTCCTTCTAATTCTACTAATTGAGAACCAAATATTCACAAATAACTATGAGCATAGCCTATGAAGGCCATGCTTGTTCAAACCACCACAATGTAATTACATGATAGAATGACTTTCAAGAACTGGTCTTACTATGCATTTTATTTTGTATGCACAAATCACATGGAAATGGCAGCAAATTTCTTGTCATATTTGTTATAATCTGAGAAGTCACTCTAAAGAATAAATTTCATATCATATACATTATTCTAAAATATACATGTATCATCTGTTTTACATATAACTACCATGACTGCGTTTGTAAAAGTAATTTTTATTTGACAGCTGTAATTGTCTCTAGGAGGTTTACTACTGAGTAAAGTCATCATTTCTAGTTCTTTCTAAACTTTCAACCTGATTCTGGCAATCTGTTCTAATCTTCTGGCTCCCTATTCTTTGGCTTCTTCTTTCTTCACCTGCCACCTGTCTCTGTAACAGTGTCCTAGTCAAACTGCTACCTCTCCCTACCTCTATGCTCTGTTCTCTTAAATGGCCTCCCTCACACGTGCTGTTCTCTTAAGTAGCCTCTCATTTCTTTGCTATTGTCCTGAGAGTTGGGCATACTCTCTCTCTTACTGTCTCAGAACTTTCTCTGATTCATTGCTTTGTCTGTCCCTCACTTTTAAATGTGGTTGCGTCCTTCTTCAGTTAACCTTACTTTCCTTGTTCAGGAGAAAAGGTGTATACTAAGGATGTGTCTATATTCCAGACATAAGAACTAAAGGCGTGTCATTCCAGCTGGATCACAGAGACCTAGACGGCCTTTGGATGTGATCCCTTGCCACAGTAGCCAATATTGGTGGTTTAAAATTCATTTATATATATATATTGGCTAACTTAGTTATATATGTTCCTTGCCAAATTCTTTTATTTTTATCAGGTTCTATTCATAAAAAGTTGATTTGATGCCATTATTTTGTATAGGTTCTTAAAATAATGTTTCTTGTGTTAAATTTACCAGTTTATTCCTTTAGGATGGTCATGTTGAAATAACTTAATTTGTATTACTATTGTACCAATGTGATTGCATGTACACAAGAGCATATAAATTAAATTAATGAGAATTAGTGAGAAAATGTGTATACTTTTAGAAATTTAACCCCATAATTTAGCACAGTGTCACCTCAAGTAATTTGCTTACCAACCCCCACCCCCAAATACACATATGTGCAGTTGAACAGTATTTCTTTCTTTTTGTTATCAG
Seq C2 exon
GAAACACTTTTGACTCTGCATTAGAAAACCGAAGCACGACAGCAGCGCAGTACCTTCAAATTTGTGATAGCATGAACACAAATAAAGTACTGAAACAAAAAATCAAGAAGAGGCGGAGGGGAGAAACAAGGCAGTGGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022391:ENSRNOT00000046364:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.224
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(4.3=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(13.2=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]