GgaINT0070519 @ galGal3
Intron Retention
Gene
ENSGALG00000006929 | ZNF711
Description
NA
Coordinates
chr4:8746643-8747404:-
Coord C1 exon
chr4:8747357-8747404
Coord A exon
chr4:8746787-8747356
Coord C2 exon
chr4:8746643-8746786
Length
570 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTCTAATTTTTGTTTCTAGGGA
3' ss Score
10.29
Exon sequences
Seq C1 exon
GAGATGACAGAAGACTACCCAGAAGATATGAAGATGGTCAAGCGGCAG
Seq A exon
GTAAGGGCATGCAGATATGCTGTGTAGAGCTTTACAAGTAACTTAGTGTCTTTCAAACAGTATATATTAATTTGTGATAGTTCTCCTGATCAGAGAGTGCAAAAAATTGCCTATAAAGCATAAGCTGAAGATCTGCATAGTATTTCTCTTCTATTTTGAAATGAAAACAATTATGTAAGTGTTGTGGGCCTTCAAATTGGGTGGGGAAGTCATTGGTTGTGTATAGTTTTGTAATCAGAGCAAAGATAATGCAGTTGCTAGGAAGTAAAATCAAGTTAAATAGGTAAGAGAAAGTAACCAGCATAACCTGTCAGAAATCAAGATTCTGAGAATCCAAGATAGCAAAAAACGTACTTGAAAGTTAATAATTGTTCGAACGGTTAAGTTCTTGAGTTTGGCCAACAACAAAGGCAGTGCTTTGTATTGGCACTTTTTAAAAACATGTTCATTGTAGAGGAATGGGTGATCTGTTTTGTTTTAAAGTAGACATGTTGCTGTGCAATTCCAGTCATCAGTCCCAAAGAAAATAATTGTTTAAGATTTTTTATGGTGTCTAATTTTTGTTTCTAG
Seq C2 exon
GGAATAACTTGGATACACGATTAGAAAACAAAAACGGTAATGCAACACAATACCTGCAGATTTGTGATAGCATTAGCACTAATAGAGTGCTAAAACAAAAAACCAAGAAAAGGAGGAGAGGAGAGGCCAGGCAATGGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006929:ENSGALT00000011226:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.606
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PD(1.6=23.5),PF047048=Zfx_Zfy_act=PU(13.0=41.2)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(85.2=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGACAGAAGACTACCCAGA
R:
ATTGCCTGGCCTCTCCTCTC
Band lengths:
183-753
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]