BtaINT0166014 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002668 | ZNF711
Description
zinc finger protein 711 [Source:HGNC Symbol;Acc:HGNC:13128]
Coordinates
chrX:74975675-74977200:-
Coord C1 exon
chrX:74977153-74977200
Coord A exon
chrX:74975819-74977152
Coord C2 exon
chrX:74975675-74975818
Length
1334 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTGTATTGATTTTTTTTCAGGAA
3' ss Score
9.35
Exon sequences
Seq C1 exon
GAGATGAAAGAAGAGTTTCTCGAAGGTATGAAGATTGTCAGTCATCAG
Seq A exon
GTGAGAGAGCATTATATGTGAGATGTAAGTTAAGTAGCTGGTTTTGTATACTACTTGGTAGATAAAGAGTTATTAGTTTGTGTGTACAGACCCATTAGACTCTTATTTGCCTAAGTCATATCTAGTTAGTTATGAGTTTATTTCTTTAAGGAATTTTATTTAGAGGCATAATGTGTGTTATTCTGTGAATGCAGTTCATTTTAGATTTACCTCAGGATTTCCCTTGAGGTCCACTGGTTAAGACTCCATGTGTCCACTGCAGGGGGTGCAGGTTTGATCCCTAATTGGGGAACTGAGATCCCACATGCCACATGATGTGGCCAAAAAGTAAAAAAAATTTCTTTTTCAAGATACAAATGTCAGGCCACTTACTGCATGGGCCATAAAAGGTTACTATGGAAAAAATTATAAAATAGAAATTTTTCTGACATGAAAGTAAAAACTGTCCATGATATCAACCACTTGTTAATGTTCTCCTTGGGATGGAACTATTTTCTTAATTTCTGTGCAGCCAGTAGATTTATATAGATGTTACATAAAACTCATGTGTCAGCTTAAGTATTTTTTAGTTTTAATATGCTTCATATAGTGTTTTTTATTCCATGCTTGATAATTCTTTTTATTTTCTTACACAGGGAGAATAAAGTATCTGACTATCTTGTTTCTAACCTTAGGAGGTTTTTTACTCTCTAAATTTAAATATAGATTTCAGGTGAATTAATGAGAGACATACATATCATAGCATTTAAGCTAAACAGTTTCTTGGGCTACGTTTTTAAACTAAATTGCATAACACAAGAGAGTGTGAGAACTGATATTAAGTATTTTGTATACATTGAGTCCATTGAAATTTTGGTAAATTGCCTGTCACATTTATCTTAACTCTTAAAAAATCAATCTTACTACTTTTAGCATTAAGTAAACCATTTTGAAGCATAAATCAAGAAGTTGTTTTTTGTCATGTATTACACAGTTACCATGATTGTATTGGTTATCTGACATGTATAAATTAATTCTTTGCTAAATCTCTTTAATTTCATCAGCCTTCATTGGTGAGAAAATTGAGCTGATGTCAAGATTTTGTTCATGGTCATAAAATTCATTTTCTTACGTTTCATTTATCTGATCAGTTTGTTCCTTTAGAATGAATAAACTGGATATTTTAATTTCATATGGTATCATATTTTTGCATATTCACTTGAGAGATGAGTGTACTTTGTGAAATTTAGCACTTCAGTGGCAACTGAATGCCAAGTTTTCTCTAGTAATTCATCTAATCAAAATGAAAAGAGTATAAATATATATAGTTTAATGGTGTATTGATTTTTTTTCAG
Seq C2 exon
GAAATACTTTAGACTCAACATTAGAAAACAGAAGTAGTACAGCAGCACAGTACCTTCAAATTTGTGATAGCATCAATACAAATAAAGTACTTAAACAAAAAACCAAGAAGAGGAGAAGGGGAGAAACGAGGCAGTGGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002668:ENSBTAT00000031586:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.765 A=NA C2=0.571
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(5.2=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(15.1=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGAAAGAAGAGTTTCTCGAAGGT
R:
TGTTTGCCACTGCCTCGTTTC
Band lengths:
190-1524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]