DreINT0181637 @ danRer10
Intron Retention
Gene
ENSDARG00000071868 | znf711
Description
zinc finger protein 711 [Source:ZFIN;Acc:ZDB-GENE-081107-49]
Coordinates
chr14:11676116-11676812:-
Coord C1 exon
chr14:11676675-11676812
Coord A exon
chr14:11676248-11676674
Coord C2 exon
chr14:11676116-11676247
Length
427 bp
Sequences
Splice sites
5' ss Seq
ATGGTCATT
5' ss Score
-0.14
3' ss Seq
CTGTCATGGCTTTTCTACAGGAA
3' ss Score
9.22
Exon sequences
Seq C1 exon
ACTGTTCGGAGATGACTGACCAGGTGTATATGGAGGTCATTGTTGGGGAAGAAGAGGCTCCTGCTATCACAGAAGCTCAGATGGAGGACTCACCAGTTAACAAGACCATTGTTCCTGCAGCCTGGGCAACTGCTTATG
Seq A exon
GTCATTTATTTCACTTTGTTGTAGCGGGAGATGAGAATTGCTTTGAATGCATAGTTCACCAAAAATGAAAGTTCTGGCTGAAATTGTAATTGCCTACTACCAGCTTAATGTAGTAATGGAGCATCAGAGATGTTGTACAGAGTACATGGTTTTTTAAGTTGAAGTTTGCAGGTGCTAGATGTGAGCACATTTGAGTTTCTGAATTTCTAATTATTATGATTTATAAATTCTGATTTATTGTCGGCTTAATACTTTTGACAAAATTGTTATGCTGCAAGAGACAGAATTTTCAAGATGGGTAAACTGTACATTTCAATGAAATGTAGCTTTAAAATTTCTATAAAGAAACAATATTATTTATTTTTCGTGCATTTATATCTTGTAAATGTTCAATCAAATTTCCTTACCTGTCATGGCTTTTCTACAG
Seq C2 exon
GAAGCAGTCTAGAAAGTAAGAATGGTGCTGCCACTCCCTACCTGCAGATCACTGACAGCATCAGCACAAGCCGAGCACTTAAGCAAAAGATTAAGAAGAGAAGGCGAGGAGAGACACGCCAGTGTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071868:ENSDART00000106654:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(15.0=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(13.7=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTCGGAGATGACTGACCA
R:
CTGTCTGACACTGGCGTG
Band lengths:
270-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]