RnoINT0168714 @ rn6
Intron Retention
Gene
ENSRNOG00000022431 | Zfp867
Description
zinc finger protein 867 [Source:RGD Symbol;Acc:1642427]
Coordinates
chr10:45812071-45812641:-
Coord C1 exon
chr10:45812515-45812641
Coord A exon
chr10:45812132-45812514
Coord C2 exon
chr10:45812071-45812131
Length
383 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTCCTTGGTCTATGTTTTAGAGA
3' ss Score
7.77
Exon sequences
Seq C1 exon
GACTCAGTGGCCTTTGATGATGTGGCTATAAACTTCACCCAGGAAGAGTGGGCTTTGCTGGATCCCTCCCAGAAGAGTCTCTACAGAGATGTGATGGAGGAAGTCTTTAGGAACCTGACTTCTATAG
Seq A exon
GTAAGAATGATAACATCTCTTTCTTTCTTTTAAATATACTTTAATTGTATGTGCCTTTGTATTTTGCCTGCATATATGTCTCTGTGAGAGTGTCAGATCTTGAAGTTACAGACAGAGCTGCCATGTGGGTGCTGGGAATTGAACCCTGGTCCTATGGAAGAGCAGTCAGTGGTCTTAACTGCTAACCCCTCTCTTAAGCCTAACATTTGTTTACTTAATTAAAACAAAAACACCTGGGAATTTTTTTTAACAATTTTAATGGTGGAAAGAAACTACTTTTATGAGTAAATGGATATGATTTTTAGTATATAGTGAATCTCAAAATTGCTATTAATCTTTTGAAGTTCATAATTAACAGTGCTTTTCCTTGGTCTATGTTTTAG
Seq C2 exon
AGAAAGGGTGGGAAGACCAAAACATTGAGGATGAGGACAAAAGTCCTGAGACTAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022431:ENSRNOT00000038951:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]