HsaINT0188057 @ hg19
Intron Retention
Gene
ENSG00000188295 | ZNF669
Description
zinc finger protein 669 [Source:HGNC Symbol;Acc:25736]
Coordinates
chr1:247265033-247265415:-
Coord C1 exon
chr1:247265289-247265415
Coord A exon
chr1:247265094-247265288
Coord C2 exon
chr1:247265033-247265093
Length
195 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTTATGGGTCTGCATTTTAGGAA
3' ss Score
8.75
Exon sequences
Seq C1 exon
GACTCGGTGGCTTTTGAGGATGTGGCTGTGAACTTTACCCAGGAGGAATGGGCTTTGCTAGATTCTTCTCAGAAGAATCTCTACAGAGAAGTGATGCAGGAAACCTGCAGGAACCTGGCTTCTGTAG
Seq A exon
GTAAGAATGACAACACATTTCAGTTAATTACAGAAGTCTTTCCCTATCATCAGTGCTATTTATGATTTGGAATGTGGCAAGGGAATGATTTGGTGAATAAATCAGGCATGGGCACTGTGTACAGTGAACATTAAATCTAGTAATGTGTCTACAGTTTGTAATAATTCATGATAATTTTATGGGTCTGCATTTTAG
Seq C2 exon
GAAGCCAATGGAAAGACCAGAATATTGAAGATCACTTCGAAAAACCTGGGAAAGATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188295-ZNF669:NM_024804:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCGGTGGCTTTTGAGGAT
R:
TATATCTTTCCCAGGTTTTTCGAAGT
Band lengths:
186-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)