MmuINT1035770 @ mm10
Intron Retention
Gene
ENSMUSG00000054519 | Zfp867
Description
zinc finger protein 867 [Source:MGI Symbol;Acc:MGI:2681848]
Coordinates
chr11:59465012-59465577:-
Coord C1 exon
chr11:59465451-59465577
Coord A exon
chr11:59465073-59465450
Coord C2 exon
chr11:59465012-59465072
Length
378 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTCCTTGGTCTATATTTTAGAGA
3' ss Score
7.39
Exon sequences
Seq C1 exon
AACTCAGTGGCCTTTGACGATGTGGCTATAAACTTCACCCAGGAAGAGTGGGCTTTACTGGATCCCTCCCAGAAGAATCTCTACAGAGATGTGATGGAGGAAGTATTTAGGAACCTGACTTCTATAG
Seq A exon
GTAAGAATGATAATTTTTTTCTTTTAAATATACTTTAATTGTTTGTACATTTGTATTTTGCCTGCATATATGTCTGTGTGAGGGTGTTAGATCTTGGAGTTACAGACAGTTGTGAGCTGCCATGTGGGTGCTGGGAATTGAACCCAGATCCTATAGAATAGCGGTCAGTGGTCTTAACTGCAGAGCTATCTCTTGCCTAACATTTCTTTACTTAATTACAATGCCCTGGGAATTTTTTTTTTATCAATTTTAACAATGGAAAGGAACTACTTTTATGAATAAATGGGCATGATTTTTGGTATACAGTGAATCTCAAAGCTACTACTAATTTTTTGAAGTACATAATTAATAGTGCTTTTTCCTTGGTCTATATTTTAG
Seq C2 exon
AGAAAGGGTGGGAAGACCAGAACGTTGAGGATGAGGACAAAAATCCTCAGACAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054519:ENSMUST00000057799:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.810
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGCCTTTGACGATGTG
R:
AGATTTGTCTGAGGATTTTTGTCC
Band lengths:
182-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types