MmuINT0179994 @ mm9
Intron Retention
Gene
ENSMUSG00000054519 | Zfp867
Description
zinc finger protein 867 [Source:MGI Symbol;Acc:MGI:2681848]
Coordinates
chr11:59278514-59279079:-
Coord C1 exon
chr11:59278953-59279079
Coord A exon
chr11:59278575-59278952
Coord C2 exon
chr11:59278514-59278574
Length
378 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTCCTTGGTCTATATTTTAGAGA
3' ss Score
7.39
Exon sequences
Seq C1 exon
AACTCAGTGGCCTTTGACGATGTGGCTATAAACTTCACCCAGGAAGAGTGGGCTTTACTGGATCCCTCCCAGAAGAATCTCTACAGAGATGTGATGGAGGAAGTATTTAGGAACCTGACTTCTATAG
Seq A exon
GTAAGAATGATAATTTTTTTCTTTTAAATATACTTTAATTGTTTGTACATTTGTATTTTGCCTGCATATATGTCTGTGTGAGGGTGTTAGATCTTGGAGTTACAGACAGTTGTGAGCTGCCATGTGGGTGCTGGGAATTGAACCCAGATCCTATAGAATAGCGGTCAGTGGTCTTAACTGCAGAGCTATCTCTTGCCTAACATTTCTTTACTTAATTACAATGCCCTGGGAATTTTTTTTTTATCAATTTTAACAATGGAAAGGAACTACTTTTATGAATAAATGGGCATGATTTTTGGTATACAGTGAATCTCAAAGCTACTACTAATTTTTTGAAGTACATAATTAATAGTGCTTTTTCCTTGGTCTATATTTTAG
Seq C2 exon
AGAAAGGGTGGGAAGACCAGAACGTTGAGGATGAGGACAAAAATCCTCAGACAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054519-Zfp867:NM_178417:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.837
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NO
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGGCCTTTGACGATGTG
R:
AGATTTGTCTGAGGATTTTTGTCC
Band lengths:
182-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: