HsaINT0188542 @ hg38
Intron Retention
Gene
ENSG00000223547 | ZNF844
Description
zinc finger protein 844 [Source:HGNC Symbol;Acc:HGNC:25932]
Coordinates
chr19:12074031-12074421:+
Coord C1 exon
chr19:12074031-12074157
Coord A exon
chr19:12074158-12074360
Coord C2 exon
chr19:12074361-12074421
Length
203 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTTCTGATTCTGTATTTTAGGAG
3' ss Score
10.42
Exon sequences
Seq C1 exon
GACTTGGTGGCTTTCGAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGTCTTTGCTGGATCCTTCCCAGAAGAATCTCTACAGAGAAGTGATGCAGGAAACCTTGAGGAATCTGGCCTCCATAG
Seq A exon
GTAAGAATGACAGTATTACGTCCCCCAGTGAATGAGACAAGTGTTTCTAGCTCATTAATGCTATTCCTTGATTTGGAATATGGACAGGCAATACTTTGATGAATAAATGAGGTATGGCTCTAATGTCCCGTGAACATAGAATCTAATCATTTTTTCATAATTTTATTTTAATTCAGGATTCTTTTTCTGATTCTGTATTTTAG
Seq C2 exon
GAGAAAAATGGAAAGACCAGAACATTGAAGATCAGTACAAAAATCCCAGGAATAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000223547:ENST00000439326:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.810
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGGTGGCTTTCGAGGAT
R:
ATTCCTGGGATTTTTGTACTGATCT
Band lengths:
180-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains