MmuINT0179597 @ mm10
Intron Retention
Gene
ENSMUSG00000068959 | Zfp619
Description
zinc finger protein 619 [Source:MGI Symbol;Acc:MGI:1917477]
Coordinates
chr7:39533793-39534175:+
Coord C1 exon
chr7:39533793-39533919
Coord A exon
chr7:39533920-39534114
Coord C2 exon
chr7:39534115-39534175
Length
195 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTTCTGGGTCTACATTTTAGGAA
3' ss Score
8.11
Exon sequences
Seq C1 exon
GACTTGGTGACCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAAGAGTGGACTTTGCTGGATCCTTCTCAGAAGAACCTATACATTAATGTGATGCTGGAGACCTGCAGTAACCTTGCTTCTGTGG
Seq A exon
GTAAGAGTTTTGATAGCCCTTTACGTTTTCAATTGGACAAGTGTTCCTTCATTCTGTAATTTGGAATATATGGAAAGGGAAGAATTATGTGACTATATCAGGTATGGGTACAATGTGCATCAAGCCTAGGAACTTAGAGTTTTTTTGTACTTTCTGGTCATTGGTAATATTTTTTTTTCTGGGTCTACATTTTAG
Seq C2 exon
GAATCAAATCAGAATACCAGACCATTGAAGACCAGTATAAACAGCCTGGGAAAAATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068959:ENSMUST00000108015:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGGTGACCTTTGAGGATGT
R:
TCCCAGGCTGTTTATACTGGTCT
Band lengths:
178-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types