MmuINT0180013 @ mm9
Intron Retention
Gene
ENSMUSG00000024298 | Zfp871
Description
zinc finger protein 871 [Source:MGI Symbol;Acc:MGI:1921793]
Coordinates
chr17:32914102-32914472:-
Coord C1 exon
chr17:32914346-32914472
Coord A exon
chr17:32914163-32914345
Coord C2 exon
chr17:32914102-32914162
Length
183 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CGACTTTAATTGTATTTTAGGGA
3' ss Score
8.74
Exon sequences
Seq C1 exon
GAGTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCTCCCTGGAGGAGTGGGCTATGTTGAATCCATCCCAGAAGAACCTCTACAAAGATGTGATGCAGGAAACCTTGAGGAACCTGGCTTCTATAG
Seq A exon
GTAAGTATGCCATCATCCCTTTAATCGGTGAAAGAAAGCATGCTTCTAGATGAGTTTAAATATGGTAAAGAGGTTTGAATGACTACTTGAGATCCACCTTATACTGCAAATTTTGCTATAATCTATTAATGTATTTACTATGATGTCATAATTTATAATGATTCGACTTTAATTGTATTTTAG
Seq C2 exon
GGAGCAGTTTGGAGCACCATATCATTGAAAATATATACCGAAACTCCTGGAAAAAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024298-Zfp871:NM_172458:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGTGGCCTTTGAGGATG
R:
TCCAGGAGTTTCGGTATATATTTTCA
Band lengths:
178-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: