HsaINT0187416 @ hg19
Intron Retention
Gene
ENSG00000174586 | ZNF497
Description
zinc finger protein 497 [Source:HGNC Symbol;Acc:23714]
Coordinates
chr19:58865725-58869951:-
Coord C1 exon
chr19:58869855-58869951
Coord A exon
chr19:58869016-58869854
Coord C2 exon
chr19:58865725-58869015
Length
839 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CCTTTTCTCTCCTGTTTTAGGTC
3' ss Score
14.26
Exon sequences
Seq C1 exon
GTGCCAGCCCCCAGGCCCCAAGAGGAGCTGGTCCCCAGGACAGAGGAGGGAGAGGAGCAAGAGGCTCCCCTGGGCCCCTTCCAGGCCCCACCTCCAG
Seq A exon
GTATGGCACCATCTACACACTTGTCCCTGCCCTGCCTTGGCAGCGGGGCTGGAGACTACACAAGGATGATAAGGTGCTCAGGGCAAATGAGGATGGGTTTTGCTCGCTGTAGAGACTTCGCTGTGGGAAGGATCGGCTGGACAGGCAGGCATGGCCTTAGGACCAAGGAGGCCCTCCCACCCTTGGCCTCTCTCTCTCTCAGGGATCTGGGCTGCACAGCCACCCCATGCCTTGGACCACCTGGTCTGACCTGCACAGAGGCCTGGTGTGGACATTGCCTGGGTAACAGCCACTGAGATCCTCCAGCCTGGACATGCTGCCCATACTGTGTGGAGGGGACTACCCAGGGATCCGGCCAGGGTGGAGTGGGTGAGGCAGACATAGCTGTGTTTGGGTCAGGCGGTGTCCTCCAGCCTTCAGGAATGGAGACGGGTCCATCGTGTTCCTCACAAACTGGAGTCTCCACCTTCTTGACACTTGGGGCCCCACCCTGTGAAGCAAGGAGAGGAGAGTGGTGCCACAGTAGGGCCAGTGCAGGTGCGTGGGCAACTTTGAGTCCTTCTGCGATGCTGGCGCCCCCTCCCCTCCTGCTGGGCCGGGCCGGGTGTGGGGATGTGCACGTGGCCCTGTCAGGCAGGCCCAGAGTGCTGGCCCATCCCCCGAGTGTCTAGCCCGCCTGCTGGCCTTCCTGCTCCAGGCTCCAGAGGGCATTGGGCATCCAGGGACCTGGAGGAGAAGAGTGGGGGATGACAGCCCACCCACCGTCGTGTCCCCCTCAGGCCCTCTGTCTGGTGTTCTTTGTATTCTCTAAGGTACTTGCCTTTTCTCTCCTGTTTTAG
Seq C2 exon
GTCACAGGCGCGAGATGGAGTCCCCAAGAGGGTGGACCCTGCAGGTGGCCCCAGAGGAAGGCCAGGTCCTCTGCAATGTGAAGACTGCCACGAGGGGCCTCTCTGAGGGGGCTGTGTCTGGAGGCTGGGGGGCCTGGGAAAACTCCACGGAGGTTCCGAGGGAGGCAGGGGACGGCCAGCGGCAGCAAGCCACACTGGGGGCGGCGGACGAACAGGGAGGCCCCGGCAGGGAGCTGGGCCCCGCAGACGGTGGGCGGGACGGGGCTGGGCCCAGGAGCGAGCCTGCAGACCGGGCGTTGCGCCCTTCGCCTCTCCCAGAGGAGCCGGGCTGCCGGTGCGGGGAGTGCGGCAAGGCGTTCAGCCAGGGCTCTTACTTGCTGCAGCATCGGCGCGTGCACACAGGCGAGAAGCCGTACACGTGCCCCGAGTGCGGCAAGGCCTTCGCCTGGAGCTCCAACCTCAGCCAGCACCAGCGCATCCACAGCGGCGAGAAGCCCTACGCTTGCAGGGAGTGCGGCAAGGCCTTCCGCGCGCACTCGCAGCTCATCCACCACCAGGAGACACACAGCGGCCTGAAGCCCTTCCGCTGCCCGGACTGCGGCAAGTCCTTCGGCCGAAGCACCACGCTGGTGCAGCACCGACGCACGCACACGGGCGAGAAGCCCTACGAGTGCCCGGAGTGCGGCAAGGCCTTCAGCTGGAACTCCAATTTCCTGGAGCACCGGCGCGTGCACACGGGCGCGCGGCCGCACGCCTGCCGGGACTGTGGCAAGGCCTTCAGCCAGAGCTCCAACCTGGCCGAGCACCTGAAGATCCACGCGGGCGCACGGCCACACGCCTGTCCCGACTGCGGCAAGGCCTTCGTGCGTGTGGCGGGGCTGCGGCAGCACCGGCGCACGCACAGCAGCGAGAAGCCCTTCCCCTGCGCCGAGTGCGGAAAGGCTTTCCGCGAGAGCTCGCAGCTCCTGCAGCACCAGCGCACGCACACTGGTGAGCGGCCCTTCGAGTGCGCCGAGTGCGGCCAGGCTTTCGTCATGGGCTCCTACCTGGCGGAGCACCGGCGCGTGCACACGGGCGAGAAGCCTCATGCGTGCGCCCAGTGCGGCAAGGCCTTCAGCCAGCGCTCCAACCTACTGAGCCACCGGCGCACGCACTCGGGCGCCAAGCCCTTCGCCTGCGCCGACTGCGGCAAGGCCTTCCGCGGCAGTTCCGGCCTGGCGCACCACCGGCTTTCGCACACGGGAGAGCGACCCTTCGCCTGCGCAGAATGCGGCAAGGCCTTCCGCGGCAGCTCCGAGCTGCGCCAGCACCAGCGCCTGCACTCTGGCGAGAGGCCGTTCGTCTGCGCCCACTGCAGCAAGGCCTTCGTGCGCAAGTCGGAGCTCTTAAGCCACCGGCGCACGCACACGGGCGAGAGGCCCTACGCTTGCGGCGAGTGCGGGAAGCCTTTCAGCCACCGTTGCAACCTCAACGAGCACCAGAAGCGGCACGGGGGCCGCGCTGCGCCCTGACCCGAGGACGCCCTGAGCGGGAGGTCGCGGACACACGGCATTGCGGGGTCTCGGGCGTGAGTGCGCTGTCTGCTGGCCCAGACTTTTTCGGGCCGCCGGTGCGGGCGCCCTCCTGCTGGGAGTGCAGGGGCGGCCTTGGGTGTGGAGAACCCTGGCTGCACAGTCCCTTTGACGATAGTCCACCGGCCACCCAGGCCTGTCTGGGGACATGTAGGATGGGCTCTTACCCCAGGGAGGGCGGCAGGCTCCACTTCGGCGAGAGGTTCGTCCATGCAGAGGTGGGCAAGAACTGGGGTCTCCGACAGGTGTGGCTATTTCTTTGAGTTCTCTGGCACTGTCAAAAGCAGCCAACCCACCCCCCAGTCCACATGGTCACCACTGCTGCTACCAGCTGCTCAGTGCAGTGGCCACTGTGTCTCCTAAGGTGCTCGCTTCAGTCAGCACTTCATCTCAGGCAACCACAGGTGACAGTTAAACATGATGAAACCGCATGCTATGGCTTTCTAGTGTCTCATATTCTGTTGGCAAGAAGCTCAGCACTGCATTCCTGACCGAGGTCAGAACCAGATCAATCTCAGAATCTCACCTGTGTAGGTCTGTTTCATGGGACTTTTCTTTTTTGGGGGAGGGGGCAGGGTTTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCACTGTTTATTGCAGCCGCGACTTCTTAGGCTCAGGTGATCCTCCCACCTCAGCCTCCCAAGCAGCTGGGATGACAGACTTGCGTCACTACACCTGGCTAATTTTAAAATTTTTTGTAAGGACAGTGTCTCACCATGTTGCCTAGGCGGGTCTCAAAACTCCTGGGCTCAAGTGATCCTCCTGCCTCAGCCTCCCAAAGCGTTGGGATTATAGGCGTGAGCCACCGCACCTGGCCAGGGAACCTTCTTTATACCAAGTACCACACCAGTCAGAGTCAAGTCAGGAAATAGAAACCACACTAGGTATTTCAAACAGAGGGGATATAAGTTAGGGACTGATTGTGCAGGTTTTGCAAGGCTCAGAGAGCAAAAGTGGATGTTGCAGAATCTCAGAGCTGGATACTTGCAGGAAGCTGCTACCACCCTTAGGGCTGGAGAACCCAGGGAAGCTAAGAGGAGGGTGCAACGAGGCTGGTGTTGGGACTGCCAAAGGAAACACAGAATGACAGCTCCATCTCTGCAGACCTCAGATTTGACCAGGCCTCTGGCTGCCTGGGCAGCCTCATTGCCAATGGGCTGAAAGGTTCTGTCACTGTTCAGTGGTCTGACTTCTGAGTTCTGTGCACACCCTGAGCTCTGCTCCTCTGGCCTGGCCACCAGTCCTTGTCTGAGTGCCCCAGGTCTGGTTATGACTTCAGGCCTCAGCACCTGGTTGTCTCTTCTGCAAAGAATGCATTCTCCCCCAGTCCACCCAGAACACACAGCCTCCATCCAGGTACTGGCTCTGAGCAGGACAGAGAGCATGCAGCAGGTGCTCAGCAATATGGAAATGGGACCAAACAGAGGGAGTCTCCACAGCTCCCCGTCCCTCACAGCAGAAGCCAGAGCCGCTGCAGTGCCCAGCTGGTCTTCATCACGTCTATGAGCTCTGCAATCGCTCTGCAGTCGCCTCAACTCCTGGTCTCCTCTGCTCCTTCTCACTGCACCCGCATCTCCCATGTTTGCACTGGCTGTTCCCTCTGCCTGGAATGCTCCTTGCCCAGTTATCCCACTGTCTTCTTTGCATCTGGCACACAGTAGATGCTCAATAAATGCCTGTGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174586-ZNF497:NM_198458:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF097235=Zn-ribbon_8=WD(100=8.8),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGGAGAGGAGCAAGAG
R:
GTCTGCAGGCTCGCTCCT
Band lengths:
345-1184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)