HsaINT0187416 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:58357952-58358585:-
Coord C1 exon
chr19:58358489-58358585
Coord A exon
chr19:58358287-58358488
Coord C2 exon
chr19:58357952-58358286
Length
202 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CCTTTTCTCTCCTGTTTTAGGTC
3' ss Score
14.26
Exon sequences
Seq C1 exon
GTGCCAGCCCCCAGGCCCCAAGAGGAGCTGGTCCCCAGGACAGAGGAGGGAGAGGAGCAAGAGGCTCCCCTGGGCCCCTTCCAGGCCCCACCTCCAG
Seq A exon
GTATGGCACCATCTACACACTTGTCCCTGCCCTGCCTTGGCAGCGGGGCTGGAGACTACACAAGGATGATAAGGTGCTCAGGGCAAATGAGGATGGGTTTTGCTCGCTGTAGAGACTTCGCTGTGGGAAGGATCGGCTGGACAGGCAGGCATGGCCTTAGGACCAAGGAGGCCCTCCCACCCTTGGCCTCTCTCTCTCTCAG
Seq C2 exon
GGATCTGGGCTGCACAGCCACCCCATGCCTTGGACCACCTGGTCTGACCTGCACAGAGGCCTGGTGTGGACATTGCCTGGGTAACAGCCACTGAGATCCTCCAGCCTGGACATGCTGCCCATACTGTGTGGAGGGGACTACCCAGGGATCCGGCCAGGGTGGAGTGGGTGAGGCAGACATAGCTGTGTTTGGGTCAGGCGGTGTCCTCCAGCCTTCAGGAATGGAGACGGGTCCATCGTGTTCCTCACAAACTGGAGTCTCCACCTTCTTGACACTTGGGGCCCCACCCTGTGAAGCAAGGAGAGGAGAGTGGTGCCACAGTAGGGCCAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174586:ENST00000425453:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAGAGGAGGGAGAGGAG
R:
GGACCCGTCTCCATTCCTGAA
Band lengths:
295-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains