HsaINT1010116 @ hg38
Intron Retention
Gene
ENSG00000268049 | CTD-2619J13.9
Description
NA
Coordinates
chr19:58357999-58359603:+
Coord C1 exon
chr19:58357999-58358238
Coord A exon
chr19:58358239-58358689
Coord C2 exon
chr19:58358690-58359603
Length
451 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
ACCCTTCTCTGCACCTTCAGTTC
3' ss Score
8.73
Exon sequences
Seq C1 exon
GGTGGGGCCCCAAGTGTCAAGAAGGTGGAGACTCCAGTTTGTGAGGAACACGATGGACCCGTCTCCATTCCTGAAGGCTGGAGGACACCGCCTGACCCAAACACAGCTATGTCTGCCTCACCCACTCCACCCTGGCCGGATCCCTGGGTAGTCCCCTCCACACAGTATGGGCAGCATGTCCAGGCTGGAGGATCTCAGTGGCTGTTACCCAGGCAATGTCCACACCAGGCCTCTGTGCAG
Seq A exon
GTCAGACCAGGTGGTCCAAGGCATGGGGTGGCTGTGCAGCCCAGATCCCTGAGAGAGAGAGAGGCCAAGGGTGGGAGGGCCTCCTTGGTCCTAAGGCCATGCCTGCCTGTCCAGCCGATCCTTCCCACAGCGAAGTCTCTACAGCGAGCAAAACCCATCCTCATTTGCCCTGAGCACCTTATCATCCTTGTGTAGTCTCCAGCCCCGCTGCCAAGGCAGGGCAGGGACAAGTGTGTAGATGGTGCCATACCTGGAGGTGGGGCCTGGAAGGGGCCCAGGGGAGCCTCTTGCTCCTCTCCCTCCTCTGTCCTGGGGACCAGCTCCTCTTGGGGCCTGGGGGCTGGCACCTGGGGACAGGAAGGCAGCAGGGCAGGGTGAGGTGTTCAGCCTAGCAGATCTGAGAAAACAAGGGGCATGCGGTGGCATGACCCACCCTTCTCTGCACCTTCAG
Seq C2 exon
TTCTCAGGACACAATGCGGAGCACACAGGTGTGGACTGGAGATCTCTGACTCTGCCGTCCAAGCCAAGACCACCAAACTCCCACCTGTCACCATCACTTTCCCACAGCCCCCAGGCCCTCTCAGCCACCAACCCACGACTGGCCCCAGTGCTGGCTCAGCTGGGGTCGTGAGCAGGGGAAGCACACCCAGCCCCCAGACCAGCCCCCACTCATCTGGAGTCCTGGCCCAGCTGACTCCTGCTGTAGCCGCTCTGCCAGGGCAGTGGCCTCCTCAGGGCTGCCTAGCCACTGCTCCTGCGTGTAGGCCTGGATCTCTGGGAGCAGTGTGCCCAATAACTGCTCCAGCACCAAGAGCTCCAGCATCTGCTCCTTGGAGCAGGCCTCAGGCATCAGCCACTGGCAACACAGCTCACGCAGCTGAGCCAGGGCCCCTCGGGGCCCTGCTGCCTTCTCATAGCAGAACCCCCAGAAGCACTGGCCAGGGCTCTTGGAGCTGGGCTCACCCACCATCAGTTCCAGTGGACTCGGGAAGACCTGGGGGGCCAGGGCTGATGCCTCACTCATCTGGGCAGCCATCCTGCCCCTTTCCTGGGAGGGGAGTGCAGCTGCATGGCCCAGGGTACTTTCTCTGCAGCTGGAAACACAAAGGTGAGCCTGTGAGCACAGCAAGGCCACGAAGGTCCCCTCCTTGGGACCACCTGAGACTGAGTAAAAATGGAAGAATGGGGGTATCGGCGTTTCTGGCCCCCAGTGTCAGCATCTTTGCCCACCTGTGTGTCCAGGTGCCTGAGGGACACACTGAGGTGCCATGGCTGCTTGTACCATCCCTTCCCCCCGCCTCCCCGCTTTTCTTGAGGGTCCCTGCCCTGCCCTGTCTCCTTGGCACCCTTCATCCCACACACAGAACAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000268049:ENST00000599952:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCCAGGCAATGTCCACAC
R:
CTCCCAGAGATCCAGGCCTAC
Band lengths:
357-808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains