HsaEX0073793 @ hg38
Exon Skipping
Gene
ENSG00000174586 | ZNF497
Description
zinc finger protein 497 [Source:HGNC Symbol;Acc:HGNC:23714]
Coordinates
chr19:58354357-58362754:-
Coord C1 exon
chr19:58362677-58362754
Coord A exon
chr19:58358489-58358585
Coord C2 exon
chr19:58354357-58357649
Length
97 bp
Sequences
Splice sites
3' ss Seq
TGCTGCCTTCCTGTCCCCAGGTG
3' ss Score
12.65
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ACCATTCCACGCGGCTCGAGCCCGCGTGCGGGCCTCTTTCAGGCCGCTCCTAGTGGACGCAGAGGCGGGCCGAGGACG
Seq A exon
GTGCCAGCCCCCAGGCCCCAAGAGGAGCTGGTCCCCAGGACAGAGGAGGGAGAGGAGCAAGAGGCTCCCCTGGGCCCCTTCCAGGCCCCACCTCCAG
Seq C2 exon
GTCACAGGCGCGAGATGGAGTCCCCAAGAGGGTGGACCCTGCAGGTGGCCCCAGAGGAAGGCCAGGTCCTCTGCAATGTGAAGACTGCCACGAGGGGCCTCTCTGAGGGGGCTGTGTCTGGAGGCTGGGGGGCCTGGGAAAACTCCACGGAGGTTCCGAGGGAGGCAGGGGACGGCCAGCGGCAGCAAGCCACACTGGGGGCGGCGGACGAACAGGGAGGCCCCGGCAGGGAGCTGGGCCCCGCAGACGGTGGGCGGGACGGGGCTGGGCCCAGGAGCGAGCCTGCAGACCGGGCGTTGCGCCCTTCGCCTCTCCCAGAGGAGCCGGGCTGCCGGTGCGGGGAGTGCGGCAAGGCGTTCAGCCAGGGCTCTTACTTGCTGCAGCATCGGCGCGTGCACACAGGCGAGAAGCCGTACACGTGCCCCGAGTGCGGCAAGGCCTTCGCCTGGAGCTCCAACCTCAGCCAGCACCAGCGCATCCACAGCGGCGAGAAGCCCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174586-'0-2,'0-0,1-2=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.857
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTCAGGCCGCTCCTAGT
R:
CTCCAGACACAGCCCCCTC
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development