HsaEX7109043 @ hg38
Exon Skipping
Gene
ENSG00000174586 | ZNF497
Description
zinc finger protein 497 [Source:HGNC Symbol;Acc:HGNC:23714]
Coordinates
chr19:58354357-58358585:-
Coord C1 exon
chr19:58358489-58358585
Coord A exon
chr19:58357952-58358286
Coord C2 exon
chr19:58354357-58357649
Length
335 bp
Sequences
Splice sites
3' ss Seq
TTGGCCTCTCTCTCTCTCAGGGA
3' ss Score
11.08
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GTGCCAGCCCCCAGGCCCCAAGAGGAGCTGGTCCCCAGGACAGAGGAGGGAGAGGAGCAAGAGGCTCCCCTGGGCCCCTTCCAGGCCCCACCTCCAG
Seq A exon
GGATCTGGGCTGCACAGCCACCCCATGCCTTGGACCACCTGGTCTGACCTGCACAGAGGCCTGGTGTGGACATTGCCTGGGTAACAGCCACTGAGATCCTCCAGCCTGGACATGCTGCCCATACTGTGTGGAGGGGACTACCCAGGGATCCGGCCAGGGTGGAGTGGGTGAGGCAGACATAGCTGTGTTTGGGTCAGGCGGTGTCCTCCAGCCTTCAGGAATGGAGACGGGTCCATCGTGTTCCTCACAAACTGGAGTCTCCACCTTCTTGACACTTGGGGCCCCACCCTGTGAAGCAAGGAGAGGAGAGTGGTGCCACAGTAGGGCCAGTGCAG
Seq C2 exon
GTCACAGGCGCGAGATGGAGTCCCCAAGAGGGTGGACCCTGCAGGTGGCCCCAGAGGAAGGCCAGGTCCTCTGCAATGTGAAGACTGCCACGAGGGGCCTCTCTGAGGGGGCTGTGTCTGGAGGCTGGGGGGCCTGGGAAAACTCCACGGAGGTTCCGAGGGAGGCAGGGGACGGCCAGCGGCAGCAAGCCACACTGGGGGCGGCGGACGAACAGGGAGGCCCCGGCAGGGAGCTGGGCCCCGCAGACGGTGGGCGGGACGGGGCTGGGCCCAGGAGCGAGCCTGCAGACCGGGCGTTGCGCCCTTCGCCTCTCCCAGAGGAGCCGGGCTGCCGGTGCGGGGAGTGCGGCAAGGCGTTCAGCCAGGGCTCTTACTTGCTGCAGCATCGGCGCGTGCACACAGGCGAGAAGCCGTACACGTGCCCCGAGTGCGGCAAGGCCTTCGCCTGGAGCTCCAACCTCAGCCAGCACCAGCGCATCCACAGCGGCGAGAAGCCCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174586-'1-2,'1-1,2-2=AN
Average complexity
A_NA
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.718 C2=0.857
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGGAGAGGAGCAAGAG
R:
GTCTGCAGGCTCGCTCCT
Band lengths:
345-680
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains