HsaINT0187429 @ hg19
Intron Retention
Gene
ENSG00000186446 | ZNF501
Description
zinc finger protein 501 [Source:HGNC Symbol;Acc:23717]
Coordinates
chr3:44771124-44773052:+
Coord C1 exon
chr3:44771124-44771214
Coord A exon
chr3:44771215-44772967
Coord C2 exon
chr3:44772968-44773052
Length
1753 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GGCTCTTTTTCCTCCCTCAGTGC
3' ss Score
9.16
Exon sequences
Seq C1 exon
CTTACTCCTTTCCGCAGGGCAGCACCCAGGGACCTGAGTGTTGCAAGGTGCGAGAGGGGAGCGCCGCGGGGAGCGCCGCGGGAAGCGCATG
Seq A exon
GTGAGCGGTTTCTGCTGTGCCCGGCTGCCGCGGGTCGATTCCAGCTCCTCCCTCGGGAAGCAGGGCGTTTTTCTTCCTGGAGGGCCTGTGGAGCGGAGGCCCGAGGCCTAGGGCAAACTTGCCATGAAGAAAGGAGAGGCTGTTCGAGAGCCCTAGGCTGGGAGTCGGAGGACCTGGGTTCGATTTATACATACTTAAGCATGTCAGTGAACTTCTGGGCACTTTAGTTTTCTGATTTCCAGAAGTAAATACTGTTTCCTGCCTTGCCGTTTCCCAAAGTTGTGCGGGTTGAAGTAAGTATATGCAAGAATTAGTGCCTTCCCTTCATTATTTATTCTTCTCTAACAACAACAAAATAGGTACCGTATGAAGACATGTAGACTCAATACTTTAACAGCAGGCACTATTTATTGAATGCTTACCAGCTGGCATTCTTCTAAGTAGTTGCCATGTAGTAACCCACTTATTCATTACGACAACCCTATAAAGTAGTTACTGGTATCGTCTCCATTTAACAGTTGAAAAAACTGGAGCAAAAAAAGGTTAGGTAACTTGTTCAAAAGTCCTAGTCCTGGAGCCCATGCCATACTTGTAAGTTTGCTGGTGGAAGACAGAATGTAATCAGACTAGAAAGTCCTACAGTAGAAACTTGTAAAATTCTTTGAGAATGTAGACGAGGAAGGGCCTTGGAAAAGTCAAAATTTTCCCACAAGGAAGAGGTGTGAAGTTTCACATTTGAGCTAAATATTAAAGGTTGACTGCAAGCTTGAAAATAATTGCTGGCTTATTTGACCAAATGAGGAAATAAAAGAGACGTTTGAAAATAATTAAACAGTTTGTTCAGTGTCAGTTAAGAGATGCTAGTGGATTGGGATGTATTAGACAGGAAACCAGGTTCCTGCCTTTGAATACAGTGTTCTTTGCATTAGGAGGGTTCTTGAAACCTTTCCCTTATGAAGAGTCCTTAACATCTTACAGCAGATACTCCTTACACAAAGGCAATCCTCTTGTTATTTTCGAGAAATTCCCCCAATTCTAATTGTAGGAGGATAACTGACAGGAAGTTTCCCTGCTGTTGATTCAGCCCGTTCTTAACAAGACCCATTCACCTCACGGCTAGCTCATTTAGTACTTTTCAAATAAATGAATAAACAGATTCAATCAAAGATGGACTGGAAGGGCTTGATTTGAGGTTTTTGCTCTTTTCCCATCTGTATATAGAATCAAAGCTTTGTAGAATGTTGATATTACAAGAAGCTTTAAATATTATCTAGCTTTTCAATTTCATTTAACAAATAAGAAATGGATGAGACTGAGTGACCTGTGTTAGGTCATTGAACAAATTGGTGGCAGAGCTGAGACTAGAATCCACACCTCTTGACTGAGTCCATTACTGGTCCTACTGCCCTCTATTGTAGCCCTGCAGCATTTGACTTTTGAAATCAATGGCTTTTCCAGTAGACTTAGGGGAGCCATTGGGCTCCAACCTGATGTCGTATAAAGAAATTTTTACGCCCAGATGCTTAGTCCTAGGAAGGACCTGCCCTCTTTGTACATTGTCACATCTCTCTGAAGTCTGCCAACTCACTAATTTTTGTCACTGGAGATACTCCTCTAGGATAATAACGATATTCTTTCATTTGAACTTAAAATGGTCATTTGGTTAGAGATGGGATGTTCTTGAGTTACCCTGAATCTAGAAGGTGTAGGAAGTAGGCTGGCAATTTATGAGTGGCTCTTTTTCCTCCCTCAG
Seq C2 exon
TGCCTCAAATTCCTGCCTTTCCTCAAGAGAAGAGCCCCCAGGAGAAAAGCCAGTATTGCTTGTGCTCCTAACAACCTGTCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186446-ZNF501:NM_145044:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)