HsaINT0187429 @ hg38
Intron Retention
Gene
ENSG00000186446 | ZNF501
Description
zinc finger protein 501 [Source:HGNC Symbol;Acc:HGNC:23717]
Coordinates
chr3:44729596-44731560:+
Coord C1 exon
chr3:44729596-44729722
Coord A exon
chr3:44729723-44731475
Coord C2 exon
chr3:44731476-44731560
Length
1753 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GGCTCTTTTTCCTCCCTCAGTGC
3' ss Score
9.16
Exon sequences
Seq C1 exon
GACTGCTGACGTCACGCCGGCTGGGCGCGTCCGGGACTTACTCCTTTCCGCAGGGCAGCACCCAGGGACCTGAGTGTTGCAAGGTGCGAGAGGGGAGCGCCGCGGGGAGCGCCGCGGGAAGCGCATG
Seq A exon
GTGAGCGGTTTCTGCTGTGCCCGGCTGCCGCGGGTCGATTCCAGCTCCTCCCTCGGGAAGCAGGGCGTTTTTCTTCCTGGAGGGCCTGTGGAGCGGAGGCCCGAGGCCTAGGGCAAACTTGCCATGAAGAAAGGAGAGGCTGTTCGAGAGCCCTAGGCTGGGAGTCGGAGGACCTGGGTTCGATTTATACATACTTAAGCATGTCAGTGAACTTCTGGGCACTTTAGTTTTCTGATTTCCAGAAGTAAATACTGTTTCCTGCCTTGCCGTTTCCCAAAGTTGTGCGGGTTGAAGTAAGTATATGCAAGAATTAGTGCCTTCCCTTCATTATTTATTCTTCTCTAACAACAACAAAATAGGTACCGTATGAAGACATGTAGACTCAATACTTTAACAGCAGGCACTATTTATTGAATGCTTACCAGCTGGCATTCTTCTAAGTAGTTGCCATGTAGTAACCCACTTATTCATTACGACAACCCTATAAAGTAGTTACTGGTATCGTCTCCATTTAACAGTTGAAAAAACTGGAGCAAAAAAAGGTTAGGTAACTTGTTCAAAAGTCCTAGTCCTGGAGCCCATGCCATACTTGTAAGTTTGCTGGTGGAAGACAGAATGTAATCAGACTAGAAAGTCCTACAGTAGAAACTTGTAAAATTCTTTGAGAATGTAGACGAGGAAGGGCCTTGGAAAAGTCAAAATTTTCCCACAAGGAAGAGGTGTGAAGTTTCACATTTGAGCTAAATATTAAAGGTTGACTGCAAGCTTGAAAATAATTGCTGGCTTATTTGACCAAATGAGGAAATAAAAGAGACGTTTGAAAATAATTAAACAGTTTGTTCAGTGTCAGTTAAGAGATGCTAGTGGATTGGGATGTATTAGACAGGAAACCAGGTTCCTGCCTTTGAATACAGTGTTCTTTGCATTAGGAGGGTTCTTGAAACCTTTCCCTTATGAAGAGTCCTTAACATCTTACAGCAGATACTCCTTACACAAAGGCAATCCTCTTGTTATTTTCGAGAAATTCCCCCAATTCTAATTGTAGGAGGATAACTGACAGGAAGTTTCCCTGCTGTTGATTCAGCCCGTTCTTAACAAGACCCATTCACCTCACGGCTAGCTCATTTAGTACTTTTCAAATAAATGAATAAACAGATTCAATCAAAGATGGACTGGAAGGGCTTGATTTGAGGTTTTTGCTCTTTTCCCATCTGTATATAGAATCAAAGCTTTGTAGAATGTTGATATTACAAGAAGCTTTAAATATTATCTAGCTTTTCAATTTCATTTAACAAATAAGAAATGGATGAGACTGAGTGACCTGTGTTAGGTCATTGAACAAATTGGTGGCAGAGCTGAGACTAGAATCCACACCTCTTGACTGAGTCCATTACTGGTCCTACTGCCCTCTATTGTAGCCCTGCAGCATTTGACTTTTGAAATCAATGGCTTTTCCAGTAGACTTAGGGGAGCCATTGGGCTCCAACCTGATGTCGTATAAAGAAATTTTTACGCCCAGATGCTTAGTCCTAGGAAGGACCTGCCCTCTTTGTACATTGTCACATCTCTCTGAAGTCTGCCAACTCACTAATTTTTGTCACTGGAGATACTCCTCTAGGATAATAACGATATTCTTTCATTTGAACTTAAAATGGTCATTTGGTTAGAGATGGGATGTTCTTGAGTTACCCTGAATCTAGAAGGTGTAGGAAGTAGGCTGGCAATTTATGAGTGGCTCTTTTTCCTCCCTCAG
Seq C2 exon
TGCCTCAAATTCCTGCCTTTCCTCAAGAGAAGAGCCCCCAGGAGAAAAGCCAGTATTGCTTGTGCTCCTAACAACCTGTCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186446:ENST00000396048:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCTGACGTCACGCC
R:
GAGACAGGTTGTTAGGAGCACA
Band lengths:
209-1962
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains