HsaINT0187447 @ hg19
Intron Retention
Gene
ENSG00000081386 | ZNF510
Description
zinc finger protein 510 [Source:HGNC Symbol;Acc:29161]
Coordinates
chr9:99538282-99540328:-
Coord C1 exon
chr9:99540316-99540328
Coord A exon
chr9:99538528-99540315
Coord C2 exon
chr9:99538282-99538527
Length
1788 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AGCAGCTCTTTATGTTGCAGGAA
3' ss Score
8.02
Exon sequences
Seq C1 exon
GTTCGCAGCTCAG
Seq A exon
GTGAGAGCGCCGGGCCTCCACGCGGATTGCGGACCTGCAGGGAGGGATGTGCTAGTGTCCAGGGGGCGGGAACGCGACGTCCCGGGAACTCCCCCAAAGCAGGCCGTCGCTCCCTGTGCCTCGGCCGGCCCGGGACCTCAGCCTGAGAAGGGCCGGTGGGGGCGGGCTCCGGGGGCGTTAGGTGGGGCTGAGTCCTAGTTGGAAGATGCTCGGTGCGGGCCGAGGTATGGGCGCCAGAATGCAGCCAGGCGTCGGAAAACGCGGTGCTGGCTTCAGGAGGGGAATGCGCGTTTATTGTATTGACCATGAACCTGCCACAAAGCGCGTACAGCCCGTGGGTCTGCGGTGAGAGGCCGAGCCTAGGAGCTAGAAGGACCTCGTGAATTTTGGCTCTGTCACTTGAGCGTTTGAAAATGAGGATATTAGTAAAAACTGCTTTGTGTCGTTCAGAGGTAAGCCATCCCCTGTAAAGCATTTAGCTAAGCGCTAGTTACTAAGCAGCATGTAAATGTTGATTCCCGTTATATTTGGAAGACACTTTGTTCTTTTCATGTAGTATTTCGTTTAATTCTCACAACCACCCTATTTATATCATTAAAAATGAAGAAGGAGGAGTGAAAAGATAGAGCCAAGCTCACAAAGGATGAGAGAGCTAGGATGTCAATACATAAACACTTTACTCCCCGAATCAGGCTGTTTGTAATGGCCTACCTACCTAACCCAGCATTGCAGCCTTCACAGCACTGAGTGATTGTCCCCAAAACCCCAGGACAATGATTGTGAAGTCAGTGTGGACAGAATCTTACTATGTGGCAAGTGTATTTGTTGTGGGGTTTCTGGGATGTCTCCAGAGCCTCTGGGTTAGACTGAGGCCCCTGCCACCTCCTGTGCTGTCCCTCCTGTCTCTGTCTTTAGAAGTCAGTCTGATATTCTAGGGCAGTGAAGATGAGTCACATACGTAATTTTAAATGTTAAACTAGTAGCTACATGAAAATCTAAAACATGAAATTAATTTTAAGAACATACTGTGGTTTTCTCAGTGTATCCAAAATGTTATTTCAACATGTGGTCCTAGCCACATTTCCAGTGCTCAGTAGTTGATGTGATTGGAGGCTGTAGTCATGGATAGCAGGGTTCTAATTAATGCCAAGAGAATCAGGTTTAAGGCCTTAGGTCACTTCTTCACCAGGAGGATTTTGCTCCCTAGGGAACTTTGGAAATGTTGGAGACTTTTTTGGTGGGGGGAGAGGGGACTGAGTTTCTCTCTGTCGCCCAGGCTGGAGGGCAGTGGTGTGATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAACTGATTCTCCTGCCCCAGCCTCCCAGCTTGTAATCTCAGCTGGAATTACAAGCATGCATGGCCATGCCCAGCTAATTTTTTGTATTTTTAGTAGAGGTGGGGTTTCACCATATTGGCCAGGCTTATCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCACAGTCCTGGGATTACAGGCGTGAGCCACCACGCCCGGCCTGGAGACGTTTCTGATTGTCACAACAGGGAGAAGGGGTGTCCTAGTGTCTAGTGCATGTTTAGAAATGCTCTTAAACATCCTGCAATGCACAGGACCACTCCTTATGTCAGAGGATTATCCAGCCCAAAATGGAAGTTGTGCTGACGTGAAGAACACTGTTTTCCATGAAAGTTTCAACTAAAATAAATTTGTTACCCAGGCATCAGCCCCAGCTTCTCTGGAGCAAAGCAGCTCTTTATGTTGCAG
Seq C2 exon
GAAGGAGGGAGCCCCAGGAACAGGAGTCCCACCGAAGAACTGCTCTCTGACAGAACAGAGACCTCCTCACCAGGGCTTCCAAACAGATGCAGAAGAACCCAGAAAGGAGCAGGTCTTGATTTGCCCAACCAGCGGCACTTCTTCATCCCCTTGCCCAGAGAGCACCAGACTTGGTGATGTCGCCACATCCAGAAGCCATCACAGATTGTGTGACACTGAACACTGTGGGCCAACTTGCAGAAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000081386-ZNF510:NM_014930:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)