HsaINT0187573 @ hg19
Intron Retention
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:25294]
Coordinates
chr19:48032207-48032909:-
Coord C1 exon
chr19:48032834-48032909
Coord A exon
chr19:48032296-48032833
Coord C2 exon
chr19:48032207-48032295
Length
538 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACG
5' ss Score
7.66
3' ss Seq
TTGGCTGTGTTCTTTGATAGGTT
3' ss Score
8.76
Exon sequences
Seq C1 exon
GTCGCCCTGGAGACTCTTCTGCTCCGAGGGCCCCACAAGCCACGGACACACCTGCTCGCTGACTATCGCTACACAG
Seq A exon
GTGACGGGGAAAGGCTGCTGAGCTGGTTTGGCCCAGCTGAGACCCCTATGAATCGGCCAGCTCTGTTGCAAGCTCTGCCCCTGCCTCCTGGAGTTCTCCTCGGGACCTTTGCCTGCCTTTCAGGAGGGCCTGTCCTTGTCGGGATGACTCAGTGGGCGCCACATTCTGCTAGTGGGATCCTGCTTCGCCCTTTCCCAGTGGTTTCCTTACGGACTCTGCCCAGCTGGAAGGGGAATGATCATGGCCAGGGGGAGGGAAGATGGGCTTAGGTTCAGTGGTTGAACCCATCAGCTCTGGAAACAGGATGCCAGGGCCCCCACCTGCCTTTAGCAAGCGACTGAAGCCTCAGTTGCCACATCTGTTAAGTGGGGCTAGTAGTGGTCCCTCCCTTCTGGAGACTTTTTGAGTTTTTTATGAGATTGGCACATAATTGGTACTCAGTAATGGCAGCTATAAATGGGAAGGTGGTCTGCATTTCAGCCATGGCTGTGGTCCCAGGACAAATGGCCTTCCCCCTGTTGGCTGTGTTCTTTGATAG
Seq C2 exon
GTTCAGACGTCTGGACCCCTATAGAGAAGAGGCTTTTTAAGAAGGCGTTCTATGCCCACAAGAAGGACTTCTACTTGATACACAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156-ZNF541:NM_001101419:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)