RnoINT0168383 @ rn6
Intron Retention
Gene
ENSRNOG00000021800 | Zfp541
Description
zinc finger protein 541 [Source:RGD Symbol;Acc:1310756]
Coordinates
chr1:77988025-77988632:+
Coord C1 exon
chr1:77988025-77988100
Coord A exon
chr1:77988101-77988543
Coord C2 exon
chr1:77988544-77988632
Length
443 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
ACCTACCCTGTCCCCGGCAGGGT
3' ss Score
8.64
Exon sequences
Seq C1 exon
GTTGCCCTGGAGACTCTGTTACTCAGAGGACCCCAGAAGCCCCGGACTCACCCGCTGGCTGACTATCGCTATACAG
Seq A exon
GTGACTGGAGAAAGGGCTGCTTGACACTGGGACCTGGCTGATCTCTGCCAGGCTGATGGCAGACTTCACTTCTGCCTCCTCCCCTTGGCCTTCTTTCCAGGGCCTTTGTCTTCCTAAAGGGGCCTGTTCTTTCCAGGGGGACTTAGCAGGCACTGCTTTGAGTTCACTAAACCCCACCAGTCCTGTCCCATCGTTCACCCAGAGTTCTTCCAGCAAGATCAGTGTTCCTGTCTAGGGCAGGGGATATGGGATAAGCTGAGCCCACCTGCTTTTGTTAGGCCACTAAGGCAGGCCCAGCTAGTTGCCCACATCTATAACCTGAGGATAGTGAGTCCCCAGCTTAGTAGCATTAGGGAAGACTGTCTGAAATTAGTATATCATCAGTGTTCATAATGTCAGTCAGGCTGTGGTCCCTGGAGAAAAACCTACCCTGTCCCCGGCAG
Seq C2 exon
GGTCAGACATCTGGACCCCCATGGAGAAGAGGCTCTTCAAGAAGGCATTCTGTGCCCACAAGAAGGACTTTTACCTGATACATAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021800:ENSRNOT00000058241:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]