DreINT0062608 @ danRer10
Intron Retention
Gene
ENSDARG00000053864 | elmsan1b
Description
ELM2 and Myb/SANT-like domain containing 1b [Source:ZFIN;Acc:ZDB-GENE-131121-13]
Coordinates
chr17:37395360-37395980:+
Coord C1 exon
chr17:37395360-37395435
Coord A exon
chr17:37395436-37395891
Coord C2 exon
chr17:37395892-37395980
Length
456 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TGCTTGTCTGTCCCGCGCAGGCT
3' ss Score
8.75
Exon sequences
Seq C1 exon
GGAACCCTCACACATCTGCTATTAAAAAAAAACATCTTTTCCAAATCGCACCCTCTGGCTGACTACCACTACTCTG
Seq A exon
GTAAGTCCCTCTCAACGTCTAGCATACTTTCCCTTTCCTTCCCCCTGATTTTTTTTTTTCCCTAAGGTGATGTGAGTTAATCTGTCCGGCATGCGGCCCCCGGTACCCCGTCACCCCCTGCACTGGCATTCCAGACCACGTTCCCTGTTTCAGCTATAAACAAAAGCAGCTGAAGAGTGGAAGGGAGGGTTTCGGGTGACCGAGTGGGTTGCTGGGTAAAGTACGCGAGTGGGTTAGAGGAAAGGAGGGGGAGTATGTGTGCGTGTGTGTCTGTGGCATGTTGTTAAATCCTAGGAGAAGACAGCGGCATCATTGTTTGTCTGGACATGTGTGTGCTGGCTGTTTGCCCTCTCTCTGTCCTTTGTGTGGGGATGTATTTGTGTTAGTGAGGGGGGTGGGATGGGGGACTCAACAAGCAGATTCTGATACCGTGGTCTGCTTGTCTGTCCCGCGCAG
Seq C2 exon
GCTCTGACAGCTGGACGCCAGAAGAGCGACGGCTCTTTAACAAAGGCATCGCTACTTACAAGAAGGACTTCTTCATGGTCCAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053864:ENSDART00000157122:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]