HsaINT0020752 @ hg19
Intron Retention
Gene
ENSG00000156030 | C14orf43
Description
chromosome 14 open reading frame 43 [Source:HGNC Symbol;Acc:19853]
Coordinates
chr14:74191975-74192811:-
Coord C1 exon
chr14:74192736-74192811
Coord A exon
chr14:74192064-74192735
Coord C2 exon
chr14:74191975-74192063
Length
672 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GCTGCCTCTTTGCCCCATAGGCT
3' ss Score
9.88
Exon sequences
Seq C1 exon
GAAACGCTGAATAAGCTGCTGCTGAAGAAGCCCCTGCGGCCCCACAACCATCCGCTGGCAACTTATCACTACACAG
Seq A exon
GTGGGCCTGGCTGCGGTGGGCATGGTGCCTGGAGCCTCAAGAGGTCTCCAGCATCCATGGGGCCCTGCTCAGTGCTGAGTCACAGCCCTGGGTGGGGGCGGGAGGAGGAGGGTAGATAAGCCAAGAGTCAGAGTGAGGGAACTGCCACCAAAGCTGGGGTAGCTCTCCAGGGGTTTCCTGTGCCCTGGAGGGGAGGGGAGAAGGGAGTGGGCAGGTGGGAGACCATCCAGGCAAAAAAGCCCAGGCCACAAGGACAGGAACCCATGGAGAGCCATCCAGATTGGCATCAGGTACCTGGAACTTAGCCCCAGGAGTGCATGTCCTGTTCTGGTCACTTTAAGAAGGACATGGACCGAGTCACATAATCCTAACAGCCAATGTTTTCCATGCATGTTAGTGCTACATTTCATCTGCACCAGGCAGAGCACCAAGGGTTTCACATGCATTATCTTATTTAATCCTCACCACAGCTGGTGAGCTAGGTGATATTAGTTTCCATTTCACAAGCAAGGGAGCGAGGCTGTGAGGCACATGGAAGTGGGACGAGGAGCCGGCTCTGATGCCTGCAGAAACCATGGGCGGATGGCCTCACACTTTTTTGCTTGTCAAAATTGCCCTGCAGTGGCCAGGGCCCTGCCCACCTCACTCCCTGGCTGCCTCTTTGCCCCATAG
Seq C2 exon
GCTCTGACCAGTGGAAGATGGCCGAGAGGAAGCTGTTCAACAAAGGCATTGCCATCTACAAGAAGGATTTCTTCCTGGTGCAGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156030-C14orf43:NM_001043318:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)